LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa05g1985	ATGGTTGTTACTGGGCCACGAGCCGGAGCCGAGTTCTCGAGTTTATTACAGCAAGCAATCAAAGTCGACTTGTTAGGATCGTTGGTTGGTTCTTTGAGAAATCTTGAACAGATTGATTTGATCTTTGAAGCCATGAAGAGAGGCAGAGGAGCCGCGCCTGTAAGGGCGGTGGATGCGGCGGCGGCGGCGGTCGAATTAGACGGATCCGGGACAAGGACGATTTTAAAAGAGCCGAGGTACCGGGGCGTGAGGAAGAGACCTTGGGGGCGGTACGCCGCTGAGATTAGAGATCCTGTGAAGAAAGCTCGGGTGTGGCTCGGCACCTTCGATTCCGCCGAAGAAGCGGCTCGAGCCTACGACGCCGCGGCTTGCGCCCTCCGTGGACCCAAGGCAAAGACCAATTTCCCCCTCTCACCCTTCTGCTACCACAACAACAACCCCAATAACGATCCCTTCCTAGATCATCGATTGTACGCTACCACGAATTGCTTCCAGGACCACCAGATTAATCCCCAAAGACCGACCTCCAGCGGCATGAGCAGCACCGTCGAGTCCTTCAGCGGGCCCCGCCCTCCGTCGGTTACGGCGCCGGCGACGACGGTCCCCTCTCGAAGATACCCTCGGACGCCCCCGGTCGTGCCAGAGGATTGCCACAGCGACTGCGATTCGTCGTCGTCGGTTGTTGACGACGACGGCGATATCGCATCGTCGTTTTTCCGTCCGCCGTTGCCCTTCGATCTTAATTTCCCACCGGTGAACGATGATGCTGACTTAGTGAGGGCCGTTGATGATCTACACTGCACCGATCTATGCCTCTGA	819	0.5726	MVVTGPRAGAEFSSLLQQAIKVDLLGSLVGSLRNLEQIDLIFEAMKRGRGAAPVRAVDAAAAAVELDGSGTRTILKEPRYRGVRKRPWGRYAAEIRDPVKKARVWLGTFDSAEEAARAYDAAACALRGPKAKTNFPLSPFCYHNNNPNNDPFLDHRLYATTNCFQDHQINPQRPTSSGMSSTVESFSGPRPPSVTAPATTVPSRRYPRTPPVVPEDCHSDCDSSSSVVDDDGDIASSFFRPPLPFDLNFPPVNDDADLVRAVDDLHCTDLCL	272

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa05g1985	272	PRINTS	Ethylene responsive element binding protein signature	102	118	IPR001471	GO:0003700\|GO:0006355
	Bisa05g1985	272	PRINTS	Ethylene responsive element binding protein signature	80	91	IPR001471	GO:0003700\|GO:0006355
	Bisa05g1985	272	FunFam	Ethylene-responsive transcription factor 2	79	137	-	-
	Bisa05g1985	272	Gene3D	AP2/ERF domain	79	138	IPR036955	GO:0003700\|GO:0006355
	Bisa05g1985	272	MobiDBLite	consensus disorder prediction	168	233	-	-
	Bisa05g1985	272	Pfam	AP2 domain	78	128	IPR001471	GO:0003700\|GO:0006355
	Bisa05g1985	272	SMART	rav1_2	79	144	IPR001471	GO:0003700\|GO:0006355
	Bisa05g1985	272	SUPERFAMILY	DNA-binding domain	79	138	IPR016177	GO:0003677
	Bisa05g1985	272	CDD	AP2	78	138	IPR001471	GO:0003700\|GO:0006355
	Bisa05g1985	272	ProSiteProfiles	AP2/ERF domain profile.	79	136	IPR001471	GO:0003700\|GO:0006355
	Bisa05g1985	272	PANTHER	AP2 DOMAIN CLASS TRANSCRIPTION FACTOR	59	231	-	-
	Bisa05g1985	272	MobiDBLite	consensus disorder prediction	168	202	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa05g1985	Bisa-ChrBisa05	41772006	41773266	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa05g1985	45	272	AP2-EREBP Transcription Factor Family	AT1G50640	61.475	2.31e-62	194

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-ERF	Bisa05g1985		AP2	1.1e-15	CL0081