Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1927 ATGTCTCAGACTAACTGGGAAGCTGATAAGATGTTAGATGTTTACATCCATGATTACTTAGTAAAGAGGGATTTGAAGGCTACAGCTCAGGCTTTTCAAGCTGAAGGGAAAGTATCATCTGATCCTGTTGCTATTGATGCCCCGGGAGGTTTTCTCTTCGAGTGGTGGTCTGTTTTTTGGGATATATTTATTGCTAGGACTAATGAGAAGCACTCAGACGTTGCTGCATCTTATATTGAGACACAGTTAATTAAGGGAAGGGAGCAGCAGCAACAGCAGCAGCTGCAACCCCAGCAGTCACAGCAGCAACAACAGCAACAGCAGCAACAACAGCAACAGCAGCATATGCAGATGCAACAGCTCCTGCTACAGAGGCATGCACAGCAGCAACAGCAGCAGCAGCAGCAGCAGCAGCAACAACAACAACCGCAGCCACAGCAACAGCAGCCACCACCACAGCAGCAGAGAAGGGATGGGCCTCATCTATTAAATGGCAGTACAAATGGATTAGTTGAAAACCCTCTCATGCGGCAGAACCCTGGTACTGCAAATGCGCTAGCCACAAAGATGTATGAGGAAAGGTTAAAACTGCCTCTTCAGAGGGATTCTTTGGATGAGGCAGCAATGAAGCAAAGATTTGGTGAGAACATGGGCCAACTCTTGGACCCAAGTCAAGCCTCAATGTTGAAGTCAGCTGCAGCTTCTAGCCAGCCTTCCGGGCAAGTGTTGCATGGTTCTGCTGGTGGAATGTCTCAACAAGTTCAAGCTCGTAGTCAGCAGTTACCAGGGTCAACTCCGGATATAAAGAGCGAGATAAACCCTGTTTTGAATCCAAGAGCTGCAGGTCCAGAAGGGTCATTGATAGGAATTCCTGGATCAAATCAAGGTAGCAACAACTTGACTCTTAAAGGGTGGCCACTTAAAGGATTGGATCCACTGCGCTCTGGTCTTCTCCCGCAACAAAAGCCTTTTATACAAGCTCCTCAGCCCTTTCCTCAACTTCAAATGTTGACGCCACAGCATCAGCAACAGCTTATGCTTGCACAACAAAATCTTGCATCGCCATCTGCCGGTGATGAAAGTAGACGACTTAGAATGCTATTGAATAGTAGGAATATGGGCCTAAGTAAAGATGGCCTTCCAAACCCTGTTGGTGATGTGGTATCAAATGTTGGCTCTCCTATTCAAGCTGGCAGCCCCCTTTTGCCTCGTGGAGATACAGATATGCTAATGAAGTTAAAATTGGCTCAGTTACAGCAGCAACATCAACAACAGAATACCAATCCACAGCAGCAGCAACTTCAACAGCATGCTCTTTCAAATCAGCAATCTCAGACTTTAAATCATACCATACATCAGCAAGATAAGATAGGTGGTGTTGGTGTTAGTGTCACTGCAGATGGAAGTATGTCAAACTCTTTTAGAGGAAATGATCAGACTTCCAAAAACCAGACTGGGAGAAAGAGGAAGCAGCCTGTATCTTCTTCTGGTCCTGCCAATAGCTCAGGAACAGCAAATACGGCAGGCCCATCACCAAGTTCAGCACCCTCAACTCCTTCAACTCATACTCCTGGAGATGTGATATCAATGCCTGCTTTACCTCATAGTGGTAGTTCTTCAAAGCCTCTAATGATGTTTGGCACTGATGGCACTGGAACTCTTACATCACCTTCAAACCAGTTGTGGGATGATAAGGATCTTGAATTGCAGGCTGATATGGATCGTTTTGTTGAAGATGGATCTCTTGATGACAATGTTGAATCTTTTTTATCCCATGATGACACAGACCCTAGAGATGCTGTCGGTCGTTGTATGGATGTAAGCAAAGGCTGCTCTTTTGCTGAAGTAAATTCTGTACGAGCTAGTACAAGCAAAGTTATTTGTTGCCACTTCTCATCGGATGGGAAATTGCTTGCAAGTGGTGGCCATGACAAAAAGGCTGTTTTATGGTACACAGATTCTCTCAAGTCAAAAGCTACTCTTGAAGAACATTCATCCTTGATAACTGATGTCCGTTTCAGTCCAACCATGCCCCATCTTGCAACATCTTCATTTGACAAAACTGTTAGGGTTTGGGATGTTGACAATCCTGGGTATTCGATTCGCAACTTTACAGGACATTCTGCGTCTGTTATGTCGCTAGATTTTCATCCAAATAAAGATGATCTTATCTGCTCTTGTGACAGTGATGGTGAAATAAGATATTGGAGTATAAATAATGGCAGCTGTGCTAGAGTGTCTAAGGGTGGCACTGCCCAGATGAGATTTCAACCTCGCTTAGGGAGGTACCTTGCTGCTGCTGCAGAGAACGTTGTCTCTATACTTGATGTGGAGGCACAAGTATGCCGATATTCATTACAGGGACATACAAAGCCAATACATTCTGTGTGCTGGGACCCTTCTGGGGAGTTGTTAGCGTCTGTGAGTGAGGACTCTGTCCGGGTTTGGACTCTTGGAACAGGGAGCGAAGGTGACTGTGTTCATGAGCTAAGCTGTAACGGGAGTAAATTTCACTCGTGTGTTTTCCATCCCTCATATCCTTCGTTGCTCGTCATTGGCTGTTACCAGTCTTTGGAGCTTTGGAACATGGCGGAGAACAAGACGATGACTCTGTCGGCTCACGAAGGACTCATTGCTTCCTTGGCAGTCTCGACTGTAACCGGTTTGGTTGCTTCGGCCAGTCATGACAAGTTAGTCAAGCTCTGGAAATAA 2712 0.4558 MSQTNWEADKMLDVYIHDYLVKRDLKATAQAFQAEGKVSSDPVAIDAPGGFLFEWWSVFWDIFIARTNEKHSDVAASYIETQLIKGREQQQQQQLQPQQSQQQQQQQQQQQQQQHMQMQQLLLQRHAQQQQQQQQQQQQQQQPQPQQQQPPPQQQRRDGPHLLNGSTNGLVENPLMRQNPGTANALATKMYEERLKLPLQRDSLDEAAMKQRFGENMGQLLDPSQASMLKSAAASSQPSGQVLHGSAGGMSQQVQARSQQLPGSTPDIKSEINPVLNPRAAGPEGSLIGIPGSNQGSNNLTLKGWPLKGLDPLRSGLLPQQKPFIQAPQPFPQLQMLTPQHQQQLMLAQQNLASPSAGDESRRLRMLLNSRNMGLSKDGLPNPVGDVVSNVGSPIQAGSPLLPRGDTDMLMKLKLAQLQQQHQQQNTNPQQQQLQQHALSNQQSQTLNHTIHQQDKIGGVGVSVTADGSMSNSFRGNDQTSKNQTGRKRKQPVSSSGPANSSGTANTAGPSPSSAPSTPSTHTPGDVISMPALPHSGSSSKPLMMFGTDGTGTLTSPSNQLWDDKDLELQADMDRFVEDGSLDDNVESFLSHDDTDPRDAVGRCMDVSKGCSFAEVNSVRASTSKVICCHFSSDGKLLASGGHDKKAVLWYTDSLKSKATLEEHSSLITDVRFSPTMPHLATSSFDKTVRVWDVDNPGYSIRNFTGHSASVMSLDFHPNKDDLICSCDSDGEIRYWSINNGSCARVSKGGTAQMRFQPRLGRYLAAAAENVVSILDVEAQVCRYSLQGHTKPIHSVCWDPSGELLASVSEDSVRVWTLGTGSEGDCVHELSCNGSKFHSCVFHPSYPSLLVIGCYQSLELWNMAENKTMTLSAHEGLIASLAVSTVTGLVASASHDKLVKLWK 903
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1927 903 CDD WD40 615 903 - -
Bisa05g1927 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 704 742 - -
Bisa05g1927 903 ProSitePatterns Trp-Asp (WD) repeats signature. 680 694 IPR019775 -
Bisa05g1927 903 Pfam LisH 10 36 IPR006594 GO:0005515
Bisa05g1927 903 MobiDBLite consensus disorder prediction 226 267 - -
Bisa05g1927 903 MobiDBLite consensus disorder prediction 461 560 - -
Bisa05g1927 903 Gene3D - 594 755 IPR015943 GO:0005515
Bisa05g1927 903 MobiDBLite consensus disorder prediction 122 144 - -
Bisa05g1927 903 MobiDBLite consensus disorder prediction 417 444 - -
Bisa05g1927 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 786 818 IPR001680 GO:0005515
Bisa05g1927 903 SUPERFAMILY WD40 repeat-like 616 903 IPR036322 GO:0005515
Bisa05g1927 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 661 696 - -
Bisa05g1927 903 PANTHER TRANSCRIPTION ACTIVATOR MSS11 2 903 - -
Bisa05g1927 903 SMART Lish 8 40 IPR006594 GO:0005515
Bisa05g1927 903 Gene3D - 756 903 IPR015943 GO:0005515
Bisa05g1927 903 MobiDBLite consensus disorder prediction 533 560 - -
Bisa05g1927 903 SMART WD40_4 864 903 IPR001680 GO:0005515
Bisa05g1927 903 SMART WD40_4 823 862 IPR001680 GO:0005515
Bisa05g1927 903 SMART WD40_4 654 693 IPR001680 GO:0005515
Bisa05g1927 903 SMART WD40_4 697 737 IPR001680 GO:0005515
Bisa05g1927 903 SMART WD40_4 612 651 IPR001680 GO:0005515
Bisa05g1927 903 SMART WD40_4 779 817 IPR001680 GO:0005515
Bisa05g1927 903 FunFam Transcriptional corepressor LEUNIG 747 903 - -
Bisa05g1927 903 MobiDBLite consensus disorder prediction 122 180 - -
Bisa05g1927 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 661 696 IPR001680 GO:0005515
Bisa05g1927 903 MobiDBLite consensus disorder prediction 151 180 - -
Bisa05g1927 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 619 660 IPR001680 GO:0005515
Bisa05g1927 903 Pfam WD domain, G-beta repeat 866 903 IPR001680 GO:0005515
Bisa05g1927 903 Pfam WD domain, G-beta repeat 621 650 IPR001680 GO:0005515
Bisa05g1927 903 Pfam WD domain, G-beta repeat 701 737 IPR001680 GO:0005515
Bisa05g1927 903 Pfam WD domain, G-beta repeat 782 816 IPR001680 GO:0005515
Bisa05g1927 903 Pfam WD domain, G-beta repeat 659 693 IPR001680 GO:0005515
Bisa05g1927 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 871 903 IPR001680 GO:0005515
Bisa05g1927 903 Coils Coil 118 138 - -
Bisa05g1927 903 ProSiteProfiles Trp-Asp (WD) repeats profile. 704 746 IPR001680 GO:0005515
Bisa05g1927 903 MobiDBLite consensus disorder prediction 465 525 - -
Bisa05g1927 903 ProSiteProfiles LIS1 homology (LisH) motif profile. 8 40 IPR006594 GO:0005515
Bisa05g1927 903 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 871 903 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1927 Bisa-ChrBisa05 39631945 39647343 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1927 698 902 Miscellaneous Gene Families AT5G08390 26.540 6.97e-13 70.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR LUG Bisa05g1927 WD40 0.076 CL0186