Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1921 ATGGATCAGACAGAGTACTTCAACAACAGTCAACATGTCATTGACCTAACAGGGAGTAGTGATGCTTCAGCATCTACCTCTTCTCATGATAGATATTTTAGTGGCATAGATACAACAGAGCAAGAAGATGGCCCTAATGGTGCAGGACTTCCTGTTTCTCAGCCATCAATTTCTCCCTCTAGTGTATCGCGCGGATCTAATTCTAGGAATGCTCCATCCATTAGACAAGAGGAAAGCCATCAACCCAGGAATCCACTAAATTCTGGATTTTGGATATCAATTGAGCTATTCCTCACAATAAGCCAGCTTGCTGCATCTATCATTGTTTTGTCTTTATCAAAGCATGAGCGTCCACACACTCCATTGAACATATGGATCATTGGTTATGCCTATGGATGTTTTTTTATCCTTCCCCTGCTTTATTGGCGGTATTTTCATGATAACCAGATTCATGTGCAAGATCCATATCAACCACATCAGACTTCTTCTCAGATTAATGTTTCTTCAGGAACATATCTTTCTGTTAACAGAACTAGTGGAGGAGAAGATGACCAGGCTACTGCTGCATCATCTCAAAGCAATCAAAGTTCAAGATTGATGAATCCAAGAATGAGGAGAGTAATGGATTACTACAAACTGGCCTTAGATATCTTTTTTGCTGTATGGTTTATTATTGGCATTGTATGGATCTTTGGGGGACCATCATCTGCTAAGGAAGCTCCTAACTTGTACAGGTTAACTATAGTGTTCCTTACCTTTTGCTGTATTGGCTACGCAATGCCTTTCATTCTCTGTGCAACAATATGCTGTTGTCTGCCTTGTATAATTTCCATCTTCGGGGTTAGAGAAGATCAGATACAAACCAGAGGGGCTACTGTTGAATCTATTAATGCTTTGCCAACTCACAATTTCAAAATGAAGAAAAGTGAAAACAATGGAAGCAACTCTTCTGCTGGTGAAGGTGGAATTGTGGCTGCTGGAACTGAAAAGGAACGTGTGATCTCTGAAGAGGATGCGACTTGCTGCATCTGCTTGATAAACTATGAAGACGAAGATGAGTTGAGAGAATTGACATGTTCTCATCTTTTCCACAAAGACTGTGTAGATAAGTGGTTGAAAATAAATGCAACGTGTCCTCTCTGCAAAGGTGAGGTTGGTGAGACCGCACAAGAAGCATCAGGCTCTGGAGTAAACGCTGGCCAACGGGTGCGAGCTGCAAATGAGAATGCCCCAGCTGATACCTTGCTATAA 1251 0.4149 MDQTEYFNNSQHVIDLTGSSDASASTSSHDRYFSGIDTTEQEDGPNGAGLPVSQPSISPSSVSRGSNSRNAPSIRQEESHQPRNPLNSGFWISIELFLTISQLAASIIVLSLSKHERPHTPLNIWIIGYAYGCFFILPLLYWRYFHDNQIHVQDPYQPHQTSSQINVSSGTYLSVNRTSGGEDDQATAASSQSNQSSRLMNPRMRRVMDYYKLALDIFFAVWFIIGIVWIFGGPSSAKEAPNLYRLTIVFLTFCCIGYAMPFILCATICCCLPCIISIFGVREDQIQTRGATVESINALPTHNFKMKKSENNGSNSSAGEGGIVAAGTEKERVISEEDATCCICLINYEDEDELRELTCSHLFHKDCVDKWLKINATCPLCKGEVGETAQEASGSGVNAGQRVRAANENAPADTLL 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1921 416 MobiDBLite consensus disorder prediction 51 82 - -
Bisa05g1921 416 MobiDBLite consensus disorder prediction 178 197 - -
Bisa05g1921 416 MobiDBLite consensus disorder prediction 392 416 - -
Bisa05g1921 416 SUPERFAMILY RING/U-box 332 387 - -
Bisa05g1921 416 PANTHER C3H4 TYPE ZINC FINGER PROTEIN 1 385 - -
Bisa05g1921 416 ProSiteProfiles Zinc finger RING-type profile. 341 382 IPR001841 -
Bisa05g1921 416 Pfam Ring finger domain 340 382 IPR001841 -
Bisa05g1921 416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 323 392 IPR013083 -
Bisa05g1921 416 MobiDBLite consensus disorder prediction 18 34 - -
Bisa05g1921 416 MobiDBLite consensus disorder prediction 18 82 - -
Bisa05g1921 416 CDD RING-H2_PA-TM-RING 340 382 - -
Bisa05g1921 416 SMART ring_2 341 381 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1921 Bisa-ChrBisa05 39274316 39279942 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1921 53 393 C3H Transcription Factor Family AT1G80400 52.187 7.01e-128 373