Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1919 ATGCCTATCAAATCGACGCAATCCTCGTTTCGTGATCGGACACAGGAATTTCAGAGCATAGCGGAGAGGCTAAAGAAGTCAGAATCATCAGGATCAGTGCCAAATGGGCCAAGTAGTAGTTCAAGATCGGAGGAACAGCGATCTGCTGTCGCAATTCAGTCAGAGTTCAATAGGAGGGCTTCCAAGATTGGATATGGAATACATCAGACGTCACAGAAACTTGCTAAGCTGGCCAAGTTGGCAAAAAGGACTTCAGTTTTCGATGACCCCACCATGGAAATCCAAGAGCTCACAGCAGTTATTAAGCAAGATATTACTGCACTCAACTCTACCGTTGTGGATCTTCAGTTAATCAGCAACTCTAGAAATGAAAGGGGGAATATCTCTAGTGACACAACTAGTCATTCAACTACAGTTGTGGATGACCTTAAAACCCGATTGATGAGCACCACAAAAGAGTTTAAAGAAGTCCTCACCATGCGAACAGAGAACTTGAAAGTACATGAGAACAGAAGACAATTGTTCTCTTCCTCTGCTTCTATGGATACTGCAAATCCTTTTGTCCGTCAGCGCCCCTTGGCTGCAAGGTCAGCTGTTAGTGCTTCTAATAACCCTGCTCCCCCATGGGCTAGTGGTTCACCATCTTCATCTCAGTTATTTCCCAAAAAGCAGGTAGATGTGGAGAGTCAACCATTGCTGCAGCAGCAGCAGCAGCAGCAACAACAACAGCAAATGGTTCCATTGCAAGACACTTACATGCAAAGCAGAGCTGAAGCTCTTCAGAATGTTGAGTCCACTATTCATGAGTTGAGTAACATCTTTAATCAATTGGCAACGCTGGTTTCCCAACAAGGAGAAATTGCCATCAGGATTGATGAGAACATGGATGATACCTTGGCAAATGTAGAGGGGGCACAGGGAGCTTTGTTAAAATATCTGAATAGCATATCTTCTAACAGGTGGTTGATGATCAAGATATTCTTTGTGTTGATATTTTTTCTCATGGTTTTCCTATTTTTTGTGGCGTAG 1029 0.4344 MPIKSTQSSFRDRTQEFQSIAERLKKSESSGSVPNGPSSSSRSEEQRSAVAIQSEFNRRASKIGYGIHQTSQKLAKLAKLAKRTSVFDDPTMEIQELTAVIKQDITALNSTVVDLQLISNSRNERGNISSDTTSHSTTVVDDLKTRLMSTTKEFKEVLTMRTENLKVHENRRQLFSSSASMDTANPFVRQRPLAARSAVSASNNPAPPWASGSPSSSQLFPKKQVDVESQPLLQQQQQQQQQQQMVPLQDTYMQSRAEALQNVESTIHELSNIFNQLATLVSQQGEIAIRIDENMDDTLANVEGAQGALLKYLNSISSNRWLMIKIFFVLIFFLMVFLFFVA 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1919 342 SMART tSNARE_6 245 312 IPR000727 -
Bisa05g1919 342 Pfam SNARE domain 286 338 IPR000727 -
Bisa05g1919 342 MobiDBLite consensus disorder prediction 1 15 - -
Bisa05g1919 342 ProSitePatterns Syntaxin / epimorphin family signature. 256 295 IPR006012 GO:0005484|GO:0006886|GO:0016020
Bisa05g1919 342 MobiDBLite consensus disorder prediction 195 219 - -
Bisa05g1919 342 SUPERFAMILY t-snare proteins 54 305 IPR010989 GO:0016020|GO:0016192
Bisa05g1919 342 CDD SNARE_syntaxin5 253 331 - -
Bisa05g1919 342 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 250 312 IPR000727 -
Bisa05g1919 342 MobiDBLite consensus disorder prediction 196 219 - -
Bisa05g1919 342 Gene3D - 51 305 - -
Bisa05g1919 342 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 8 26 IPR021538 -
Bisa05g1919 342 PANTHER SYNTAXIN 52 334 IPR045242 -
Bisa05g1919 342 MobiDBLite consensus disorder prediction 24 50 - -
Bisa05g1919 342 MobiDBLite consensus disorder prediction 1 50 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1919 Bisa-ChrBisa05 39181945 39188553 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1919 1 342 SNARE and Associated Proteins AT3G24350 65.659 2.20e-144 410