Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1880 ATGGCGTACCACAACCATCATCTCTCCCAAGAGCTTCCGCTCCACCATTTCACTGAGCAATCTCAGCAGCAACAGCAGCAAAACCAGGCGCTAACTGATAACTCCTTGCGTACGATATTGCCGGACCCTACCACTAAGGCCCGCTCCGATCCCCAGCACCACCAGCACCCGCTCCAGACCGCGCCCAATTGGCTCAACAACGCTCTCCTTCGAACGCACTACGCCGACAATAACAACGGCAATAACAACACTACCACCGCTCCCAACAACACCAACGCCACCAATTTCCTCAACCTCCACACTGCCGCCTCCGACTCCACCGGAGCCGCATCCCAATCTTCTAGCCAATGGCTGGCGCGCCCGATCCTCCACCGGAATCAGAGCGACGTCATTGACGACGTCACCGCCGGGGACTCTATCATGGCCGGCGCGACTTTATCCCACGAATCCGCCGATTTGAAGGCGACCGGCGACAACCTCACTAGCAAGAGCGAGGCGGTGATGGTGGACAGCGGCGCCACCGGGGACGGCTTGATGAACTGGCAGAATCCTAGGTTCAAGGCGGAGATTCTTGCCCACCCGCTCTATGAGCAGCTGCTATCGGCCCACGTGGCGTGCTTGCGGATCGCCACGCCGGTTGACCAGTTGCCGAGGATCGACGCTCAGCTGGCTCAGTCGCAGAATGTGGTGGCCAAGTACTCGGCGTTGGGCCATGGGAGTCAGAGCATGGTTGGAGATGATAAGGAACTCGATCAGTTCATGTCGCACTATGTTTTGTTGCTCTGTTCATTCAAAGAACAACTTCAACAACACGTCCGGGTCCATGCAATGGAAGCAGTAATGGCTTGTTGGGAGATAGAGCAATCCTTACAAAGTCTAACAGGTGTTTCCCCAGGAGAAGGTACAGGGGCAACAATGTCTGATGATGAAGATGATCAAGTGGACAGTGATGCCAACTTGTTTGATGGTAGTTTGGATGGTTCAGACATGGGATTTGGCCCTCTTATTCCAACAGAGAACGAGAGATCCCTCATGGAGCGTGTGAGGCAAGAATTAAAGCATGAACTCAAACAGGGCTACAAGGAGAAAATTGTGGACATAAGAGAGGAAATTTTGCGCAAGAGACGAGCAGGGAAACTTCCTGGTGACACAACCTCTGTCCTCAAAGCTTGGTGGCAATCACATTCCAAGTGGCCTTATCCTACAGAGGAAGATAAGGCAAGGTTGGTTCAGGAAACTGGCTTGCAATTGAAGCAGATTAATAATTGGTTTATCAATCAAAGGAAGAGAAACTGGCACAGCAATCCTTCAACCTCTACGGTCTTGAAGAGCAAGCGCAAAAGGTGA 1347 0.5278 MAYHNHHLSQELPLHHFTEQSQQQQQQNQALTDNSLRTILPDPTTKARSDPQHHQHPLQTAPNWLNNALLRTHYADNNNGNNNTTTAPNNTNATNFLNLHTAASDSTGAASQSSSQWLARPILHRNQSDVIDDVTAGDSIMAGATLSHESADLKATGDNLTSKSEAVMVDSGATGDGLMNWQNPRFKAEILAHPLYEQLLSAHVACLRIATPVDQLPRIDAQLAQSQNVVAKYSALGHGSQSMVGDDKELDQFMSHYVLLLCSFKEQLQQHVRVHAMEAVMACWEIEQSLQSLTGVSPGEGTGATMSDDEDDQVDSDANLFDGSLDGSDMGFGPLIPTENERSLMERVRQELKHELKQGYKEKIVDIREEILRKRRAGKLPGDTTSVLKAWWQSHSKWPYPTEEDKARLVQETGLQLKQINNWFINQRKRNWHSNPSTSTVLKSKRKR 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1880 448 CDD homeodomain 374 435 IPR001356 GO:0003677
Bisa05g1880 448 Gene3D - 370 442 - -
Bisa05g1880 448 ProSiteProfiles 'Homeobox' domain profile. 371 434 IPR001356 GO:0003677
Bisa05g1880 448 MobiDBLite consensus disorder prediction 39 59 - -
Bisa05g1880 448 MobiDBLite consensus disorder prediction 294 313 - -
Bisa05g1880 448 Pfam KNOX2 domain 244 294 IPR005541 GO:0003677|GO:0005634
Bisa05g1880 448 ProSiteProfiles ELK domain profile. 351 371 IPR005539 GO:0003677
Bisa05g1880 448 MobiDBLite consensus disorder prediction 74 93 - -
Bisa05g1880 448 SMART HOX_1 373 438 IPR001356 GO:0003677
Bisa05g1880 448 SUPERFAMILY Homeodomain-like 373 436 IPR009057 -
Bisa05g1880 448 Pfam ELK domain 351 372 IPR005539 GO:0003677
Bisa05g1880 448 Pfam KNOX1 domain 187 227 IPR005540 GO:0003677|GO:0005634
Bisa05g1880 448 Pfam Homeobox KN domain 391 430 IPR008422 GO:0003677|GO:0006355
Bisa05g1880 448 SMART KNOX1_2 184 228 IPR005540 GO:0003677|GO:0005634
Bisa05g1880 448 SMART ELK_2 351 372 IPR005539 GO:0003677
Bisa05g1880 448 FunFam homeobox protein knotted-1-like 3 isoform X1 372 433 - -
Bisa05g1880 448 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 36 433 - -
Bisa05g1880 448 Coils Coil 14 34 - -
Bisa05g1880 448 SMART KNOX2_2 240 295 IPR005541 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1880 Bisa-ChrBisa05 36092747 36096845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1880 1 448 Homeobox Transcription Factor Family AT5G25220 66.239 0.0 561
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bisa05g1880 KNOX2 1.3e-21 No_clan