LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa05g1876	ATGAAAACGAAGCTTCTTCCTCTGCTTCTGCTCATTCTTCTTCATCATCCCATTTGGGTTTATTCCGCAGCACCCCCTCTTGTACCTTCGTCTCTTTCCTTGCCTTCTTCACTTTCTGCTTCAATGGCTCCTTTCTCCCCAGGTATTCAAGCGGGGAATGAAGAGCACCAAACGGATTCACACAAGAAAATGGTTATAGTGCTCGCCGTTTCAAGTACAGCACTCGGTGCAGTCATTTTCTCCTTCTTGTGCTTCTGGATTTATAAGAGGAAACATCCATCGAAATCCAATAGGAAAAACGTCCCACGCTCAGATGCGGAGAAAGGACTCGCTCCAGCTCCATTTTTGAGTAAATTCAGTTCAATCAAGATGGTGGGGAAAAAGGGGTCTCTTCCAATAATTGATTATAAGCAAATAGAAAAAGCGACCAACAATTTCCGGGAAAGTGACAAATTGGGGGAGGGTGGATTTGGATGTGTCTACAAGGCTCGATTGGATGATAGCTTGGAGGTTGCCGTCAAGAAACTACACTGCGAAACTCAGAATGCTGAAAGAGAATTTGAGAACGAGGTGGAATTGTTAAGTGAAATGCAGCATCCAAACATTATATCTATACTGGGCTGTAGCAGTAATGAAGACACGAGGTTCATTCTGTATGAATTAATGCCAAATGGATCCCTGGAAACTCAGTTACATGGACCTTCTCATGGCTCGGCATTGACTTGGCATATGAGAATGAAAATTGCTCTTGACACAGCAAGAGGATTAGAATATCTGCACGAGCACCGTAAGCCTTCGGTGATCCATAGAGATCTGAAATCATCCAATATTCTTTTAGATGCTAACTTCAACGCCAAGCTTTGTGATTTTGGTCTGGCCATAAGGGATGGGACCCAGAGAAAGAACAACATAAAGCTATCAGGAACGTTGGGGTACTTAGCACCGGAGTATCTTCTAGATGGAAAGTTAACTGATAAAAGTGACGTGTACGCTTTCGGGGTTGTGCTTCTGGAGCTTCTGTTAGGAAGGAGGCCCGTGGAGAAACTGGCCCCAGCTCAGTGCCAATCTATAGTCACATGGGCCATGCCACAGCTCACCGACAGATCCAAGGTTCCAGACATTGTGGATCCTGCGATCAAGAATTCAATGGACCTCAAGCATTTGTACCAGGTTGCTGCTGTAGCTGTGCTGTGTGTCCAACCAGAACCAAGTTATAGGCCACTGATTACAGATGTTCTGCATTCTCTCATCCCTCTTGTTCCTGCAGAGCTTGGAGGAACGCTCAGAGTCCCACATGAGTGA	1302	0.4531	MKTKLLPLLLLILLHHPIWVYSAAPPLVPSSLSLPSSLSASMAPFSPGIQAGNEEHQTDSHKKMVIVLAVSSTALGAVIFSFLCFWIYKRKHPSKSNRKNVPRSDAEKGLAPAPFLSKFSSIKMVGKKGSLPIIDYKQIEKATNNFRESDKLGEGGFGCVYKARLDDSLEVAVKKLHCETQNAEREFENEVELLSEMQHPNIISILGCSSNEDTRFILYELMPNGSLETQLHGPSHGSALTWHMRMKIALDTARGLEYLHEHRKPSVIHRDLKSSNILLDANFNAKLCDFGLAIRDGTQRKNNIKLSGTLGYLAPEYLLDGKLTDKSDVYAFGVVLLELLLGRRPVEKLAPAQCQSIVTWAMPQLTDRSKVPDIVDPAIKNSMDLKHLYQVAAVAVLCVQPEPSYRPLITDVLHSLIPLVPAELGGTLRVPHE	433

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa05g1876	433	FunFam	Protein kinase superfamily protein	113	221	-	-
	Bisa05g1876	433	Pfam	Protein kinase domain	147	414	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa05g1876	433	SMART	serkin_6	146	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa05g1876	433	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	267	279	IPR008271	GO:0004672\|GO:0006468
	Bisa05g1876	433	SUPERFAMILY	Protein kinase-like (PK-like)	125	416	IPR011009	-
	Bisa05g1876	433	PANTHER	OS01G0750732 PROTEIN	28	418	-	-
	Bisa05g1876	433	ProSiteProfiles	Protein kinase domain profile.	146	417	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa05g1876	433	Gene3D	Transferase(Phosphotransferase) domain 1	222	422	-	-
	Bisa05g1876	433	ProSitePatterns	Protein kinases ATP-binding region signature.	152	175	IPR017441	GO:0005524
	Bisa05g1876	433	FunFam	probable receptor-like protein kinase At1g80640	222	421	-	-
	Bisa05g1876	433	CDD	STKc_IRAK	152	419	-	-
	Bisa05g1876	433	Gene3D	Phosphorylase Kinase; domain 1	115	221	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa05g1876	Bisa-ChrBisa05	35952089	35955626	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa05g1876	53	420	Receptor kinase-like Gene Family	AT3G58690	42.667	1.68e-98	298

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_RLCK-X	Bisa05g1876		Pkinase	8e-50	CL0016