Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1867 ATGGTCGCAAACGATTTTATGCTTGTTCGCCAAGAATTAACTTGCTGGTCATGGGCAATTGCTCGTAGCCGCCATGGTGGAATAGCGGGCAGTTTTGGGGCTCCTGGTCGTAAAACCTCCAATTCATGGCGGCGCCATAAAACTCACAATGGCTGTGGCGGCAGTTATATTGAAATAAATATGAGTAGCCTGGTTGAGAGGCTTCGCGTAAGATCAGATCGCAAGCCAGTTTATAACATAGATGAATCAGATGATGATGCTGACTTTTTGCCTGGGAAACCTGGGAGAACTGAGGAAAAGTTTGAGAGGATAGTTAGAAGTGATGCAAAAGAGAATTCATGCCAAGCGTGCGGAGAAGGTGGAAATCTTCTTAGCTGTGAAATATGTACATATGCTTATCATCCTAGGTGTTTACTTCGACCACTTAAAGCTCCCCTTCCGGATAATTGGAGGTGTCCTGAATGTGTTAGCCCATTAAATGATATTGAGAAAATATTAGATTGTGAGATGCGCCCTACTGTAGCTGGTGATAGTGATGCTACAAAATTGGGTTCGAAGCAAATTTTTGTCAAACAATATCTTGTTAAGTGGAAGGGACTATCGTATCTTCATTGCACATGGGTTTCAGAGAAAGAGTTTCTGAAAGCTTTCAAGTCACATCCTCGTTTGAAGACCAAAGTAAACAACTTCCATCGTCAAATGGCAGCCTCCAATACTTCTGAGGAAGATTTTGTTGCGCTTCGTCCTGAATGGACCATGGTTGACCGTATACTTGCTTGCAGGGTTGGTGATGATGAGAAGGAGTATCTTGTGAAGTGGAAAGAGCTTTCTTATGATGAATGTTATTGGGAGTCTGAGTCCGATATTTGTGCATTTCAGCCAGAAATAGAGAGATTCACTAAATTTCAGTCTAGGTCTAGGAGATCTTCTAGTAAGCAGAAAAGTAGTGTTAAGGATGGTGCTGAAGTAAAGAAGCATCAGAAAGAATTTCATCATTATGAACATAGCCCTGACTTCCTTTCTGGTGGCACTCTACATCCATATCAGCTTGAAGGCTTGAACTTCTTACGTTTTTCTTGGTCTAAGCAAACTCATGTTATACTTGCTGATGAAATGGGACTTGGAAAAACCATACAAAGTATTGCTTTTTTAGCATCCCTTTTTGAAGAGAAAGTTTTTCCACATCTTGTTGTTGCTCCACTGTCAACACTACGAAATTGGGAACGTGAATTTGCAACATGGGCACCTCAAATGAATGTTGTTATGTATGTTGGATCTGCCCATTCTCGTGCTGTTATAAGAGAGTATGAATTTTACTTTCCAAAGAAGCAGAAGAAGATCAAGAAAAAGAAGTCTGGTAAAGTAATCAGTGAAAGCAAGCAAGACAGAATCAAATTTGATGTCCTTTTGACGTCATATGAGATGATCAACTTGGACACAGCCTCATTGAAACCAATACAGTGGGAGTGCATGATAGTTGATGAAGGTCACCGACTTAAAAATAAGGATTCGAAATTATTTTCTTCACTGAAGCAATATTCTAGTAGACATCGTGTACTTTTGACTGGGACTCCTCTCCAGAACAATCTGGATGAACTGTTTATGCTAATGCACTTCCTTGATGCTGGGAAGTTTGGAAGCTTGGAGGAGTTTCAGGAAGAGTTTAAAGATATCAATCAAGAAGAACAGATATCGAGGCTTCACAGGATGTTGGCTCCTCACCTCCTTAGAAGAGTGAAGAAAGACGTGATGAAGGAACTACCTCCTAAGAAAGAGCTTATTTTGCGTGTTGAATTAAGCAGCAAACAGAAAGAATATTATAAGGCAATTTTGACCCGTAATTATCAAATATTAGCTCGTCGTGGTGGTGCACAGATTTCTCTTATCAATGTTGTTATGGAATTGCGCAAACTATGCTGTCATCCTTATATGTTAGAAGGAGTTGAACCAGATATTGAAGATGCAAAAGAATCACACAAACAGCTACTGGAATCCTCGGGGAAGTTGCAATTGTTAGACAAGATGATGGTGAAGCTTAAAGAACAAGGACACAGAGTCCTCATATATTCACAATTTCAGCACATGTTGGATTTGCTAGAAGATTACTGTTCTTATAAGTATGAGAGGATAGATGGGAAGGTTGCAGGAGCTGAAAGACAAGTGAGGATTGATCGGTTTAATGCCAAAAATTCCTCAAGATTTTGCTTTCTTCTTTCTACCCGGGCTGGGGGATTAGGAATAAACCTTGCAACTGCTGACACAGTTATTATATATGACAGTGATTGGAATCCTCATGCTGATCTACAGGCTATGGCTAGAGCTCATCGGCTTGGGCAAACTAATAAGGTGTTGATTTATAGGCTTATAACACGAGGAACCATTGAAGAAAGGATGATGCAAATGACAAAGAAGAAAATGGTGTTGGAGCATTTAGTTGTTGGGAGGCTAAAGGCTCAAAATATCAACCAGGAAGAGTTGGATGATATCATTAGGTATGGCTCGAAAGAGTTATTTGCTGATGAGAATGATGAAGCCGGAAAGTCCCGCCAAATTCATTATGATGATGCTTCCATAGATAGATTGCTGGACCGTGAGCAAGTTGGAGACGAGGAAGCTATGTTGGATGATGAAGATGATGATGGATTTCTGAAGGCTTTTAAGGTGGCAAATTTTGAATATATTGACAAAGTTGAGGCTGCAGCAGAGGAGGAGGCAATGAAGAAAGCAATGGAAAATAAATCTACAGTAAACAGTTCAGATAGAGCAACTTACTGGGAGGAGTTGTTGAGAGACAGATATGAAGTGCATAAAATTGAAGAGTTAAGTACCTTGGGCAAAGGCAAGCGGAACCGCAAGCTGATGGCTTCCGTTGAAGACGATGATCTTGCTGGTCTGGAAGATGTAAGCTCTGATGGTGAAGATGACAATTATGAAGCAGAGCTTACTGATGGCGATTCAAATTCAACTGGAACTACTTCTAGTAGACGGCCTTACAAAAAGAAAGCTCGTGTAGATAGCATGGAGCCACTTCCTTTGATGGAAGGTGAAGGGAAATCATTCAGAGTACTGGGTTTCAATCAGAGTCAGAGGGCTGCATTTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTATGACTGGAAGGAGTTTGTTCCCCGCCTGAAGCAGAAGACATACGAAGAAATCAAAGATTATGGAATGCTTTTCTTGTCTCATATTGCTGAAGATATAACTGATTCTACTACATTCTCAGATGGTGTTCCAAAAGAAGGACTTAGAATACCAGATGTGCTTGTTAGGATTGCAGTTCTCTCCTTGATAAAGGACAAAGTGAAGTTTGCATCAGAAAATCCAGGAAGTCCACTTTACACAGATGACATCTTATTACGTTATCCAACTTTGAAGGGTGGAAAGATATGGAAGGAGGAGCATGATGTAGTGTTACTGCTTGCAGTACTGAAGCATGGGTATGGAAGGTGGCAAGCTATTGTTGATGATAAAGACCTGAAGATTCAGGAGGTCATCTGTCAGGAGTTGAATCTTCCCATTATAAATTTACCGGTACCAGGACAAGTTGGTAGCCAGGTGCAAAATGGTGCAAATTTGATAAATGTAGAAGCATCCAGCAGCCAATCTAAGGTTAATGATGGGAGTGACACGGTGGCTGATGGTGCACATGGTTCTGGTGATGCTAGGAGCCAACCACAGTTGTATCAAGAGTCGTCCATATTATACCATTTTAGAGACATGCAGAGAAGACAGGTGGAGTTTGTGAAAAAGAGGGTGCTTCTGTTGGAAAAGGGACTTTATGCTGAGTACCAGAAAGAATACTATAAGGATGACAATAAAACGGATGAAGACATGAATGTAGAATTTAACAGTGAAACAGAGATCACAGATGTGCCAGTTTATAAATCTGGGGAGACTGAGAAGCAAATGATTGATCAACTGCCTCGGGTAGAAGAAATAGCTTCAGAAGAAATTTCTTGTGCTGCTTGTGATAATGATACAAATCGATTGGAATTGGTTCGACTTTACAATGAGATGTGTAGGGTTGTGGAGGAAAACACGGTGGAGTCGGTTCAAACATCCTTGGCTGGAGGACCTGCAGAAGTCAGCTTGACGAAGAACTTGCTTCCCCTAGAAACTGTTTGTGAAGACATCAATAGAATTTTGTCACCTACAAAACAAAATATTCCCACTGGAGAAATGCCAACACTGAGTCCAGATAATAAACCTGATGATACGGTACACAATGGGAGCAAAGGTGTGGTGATAGAGTCTGAGCCCGAAAAAGAAAGCAGACCAGGGACGACGGGAAGTGATACAGAAATGGGCGAAACTGGGAATGATGCTGAGTTGGATGAAGACGTGGATACACCTGACGCTGGGGTCGTTGTGTTGGATGATTAA 4413 0.4113 MVANDFMLVRQELTCWSWAIARSRHGGIAGSFGAPGRKTSNSWRRHKTHNGCGGSYIEINMSSLVERLRVRSDRKPVYNIDESDDDADFLPGKPGRTEEKFERIVRSDAKENSCQACGEGGNLLSCEICTYAYHPRCLLRPLKAPLPDNWRCPECVSPLNDIEKILDCEMRPTVAGDSDATKLGSKQIFVKQYLVKWKGLSYLHCTWVSEKEFLKAFKSHPRLKTKVNNFHRQMAASNTSEEDFVALRPEWTMVDRILACRVGDDEKEYLVKWKELSYDECYWESESDICAFQPEIERFTKFQSRSRRSSSKQKSSVKDGAEVKKHQKEFHHYEHSPDFLSGGTLHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEKVFPHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAHSRAVIREYEFYFPKKQKKIKKKKSGKVISESKQDRIKFDVLLTSYEMINLDTASLKPIQWECMIVDEGHRLKNKDSKLFSSLKQYSSRHRVLLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQEEQISRLHRMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILARRGGAQISLINVVMELRKLCCHPYMLEGVEPDIEDAKESHKQLLESSGKLQLLDKMMVKLKEQGHRVLIYSQFQHMLDLLEDYCSYKYERIDGKVAGAERQVRIDRFNAKNSSRFCFLLSTRAGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVLIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADENDEAGKSRQIHYDDASIDRLLDREQVGDEEAMLDDEDDDGFLKAFKVANFEYIDKVEAAAEEEAMKKAMENKSTVNSSDRATYWEELLRDRYEVHKIEELSTLGKGKRNRKLMASVEDDDLAGLEDVSSDGEDDNYEAELTDGDSNSTGTTSSRRPYKKKARVDSMEPLPLMEGEGKSFRVLGFNQSQRAAFVQILMRFGVGDYDWKEFVPRLKQKTYEEIKDYGMLFLSHIAEDITDSTTFSDGVPKEGLRIPDVLVRIAVLSLIKDKVKFASENPGSPLYTDDILLRYPTLKGGKIWKEEHDVVLLLAVLKHGYGRWQAIVDDKDLKIQEVICQELNLPIINLPVPGQVGSQVQNGANLINVEASSSQSKVNDGSDTVADGAHGSGDARSQPQLYQESSILYHFRDMQRRQVEFVKKRVLLLEKGLYAEYQKEYYKDDNKTDEDMNVEFNSETEITDVPVYKSGETEKQMIDQLPRVEEIASEEISCAACDNDTNRLELVRLYNEMCRVVEENTVESVQTSLAGGPAEVSLTKNLLPLETVCEDINRILSPTKQNIPTGEMPTLSPDNKPDDTVHNGSKGVVIESEPEKESRPGTTGSDTEMGETGNDAELDEDVDTPDAGVVVLDD 1470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1867 1470 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 104 159 IPR013083 -
Bisa05g1867 1470 Gene3D - 1095 1226 - -
Bisa05g1867 1470 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 81 1409 - -
Bisa05g1867 1470 SMART ultradead3 341 554 IPR014001 -
Bisa05g1867 1470 Pfam SNF2-related domain 365 645 IPR000330 GO:0005524|GO:0140658
Bisa05g1867 1470 MobiDBLite consensus disorder prediction 1395 1470 - -
Bisa05g1867 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 580 833 IPR027417 -
Bisa05g1867 1470 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 357 543 IPR014001 -
Bisa05g1867 1470 Pfam PHD-finger 114 156 IPR019787 -
Bisa05g1867 1470 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 332 578 IPR027417 -
Bisa05g1867 1470 CDD SF2_C_SNF 666 789 - -
Bisa05g1867 1470 ProSiteProfiles Chromo and chromo shadow domain profile. 160 242 IPR000953 -
Bisa05g1867 1470 Pfam CHD subfamily II, DUF1087 900 961 IPR009463 -
Bisa05g1867 1470 Gene3D - 238 301 - -
Bisa05g1867 1470 Gene3D - 337 587 IPR038718 -
Bisa05g1867 1470 MobiDBLite consensus disorder prediction 963 1002 - -
Bisa05g1867 1470 MobiDBLite consensus disorder prediction 1207 1233 - -
Bisa05g1867 1470 SUPERFAMILY Chromo domain-like 238 304 IPR016197 -
Bisa05g1867 1470 ProSiteProfiles Chromo and chromo shadow domain profile. 252 314 IPR000953 -
Bisa05g1867 1470 SUPERFAMILY Chromo domain-like 130 235 IPR016197 -
Bisa05g1867 1470 Pfam CHD subfamily II, SANT-like domain 992 1125 IPR009462 GO:0003677|GO:0006338
Bisa05g1867 1470 Gene3D - 588 809 IPR027417 -
Bisa05g1867 1470 ProSiteProfiles Zinc finger PHD-type profile. 111 158 IPR019787 -
Bisa05g1867 1470 SMART DUF1087_2 899 964 IPR009463 -
Bisa05g1867 1470 Pfam Helicase conserved C-terminal domain 668 778 IPR001650 -
Bisa05g1867 1470 CDD CD1_tandem 158 232 - -
Bisa05g1867 1470 CDD CD2_tandem 250 299 - -
Bisa05g1867 1470 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 671 829 IPR001650 -
Bisa05g1867 1470 SMART DUF1086_2 969 1128 IPR009462 GO:0003677|GO:0006338
Bisa05g1867 1470 MobiDBLite consensus disorder prediction 963 981 - -
Bisa05g1867 1470 ProSiteProfiles Rubredoxin-like domain profile. 121 165 IPR024934 GO:0005506
Bisa05g1867 1470 SMART chromo_7 159 228 IPR000953 -
Bisa05g1867 1470 SMART chromo_7 250 304 IPR000953 -
Bisa05g1867 1470 SMART helicmild6 693 778 IPR001650 -
Bisa05g1867 1470 Gene3D - 160 235 - -
Bisa05g1867 1470 ProSitePatterns Zinc finger PHD-type signature. 114 155 IPR019786 -
Bisa05g1867 1470 MobiDBLite consensus disorder prediction 1448 1464 - -
Bisa05g1867 1470 SMART PHD_3 113 156 IPR001965 -
Bisa05g1867 1470 Pfam Chromo (CHRromatin Organisation MOdifier) domain 162 216 IPR023780 -
Bisa05g1867 1470 Pfam Chromo (CHRromatin Organisation MOdifier) domain 253 301 IPR023780 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1867 Bisa-ChrBisa05 35441660 35496052 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1867 367 839 RAD5 or RAD16-like Gene Family AT1G02670 22.842 4.66e-30 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa05g1867 SNF2_N 4e-66 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g1867 05 35441660 35496052 Bisa09g1141 09 16643508 16666027 CCT