Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa05g1789 | ATGGAAACATCGGGGCCTAATACAGATCAATACGCCTTTTCTTCATCATCATCGTCTGCCGGAGGTGTAAATACCGCCAACAGTGATAGCAGTGCCAGCAGTGTAACGTGGTATGGAATGCGTTTACCCTCTGGCAGCCCCTTCCGTTACCCACTCTCTTTTCTACTGGATTACTCTGGCATTCTCCGCTCAAGCTCGTCAACACATGATTCTGAGGCTGTGATTGCCAACAACGAAGTTGCCGCTTCTGAATTACAACCCCACCTTCAAATTCCATCTCTTGGTCCTACTGCTGCAACTGCCTGCAGTGGCAGCAGAAGCAGTAGTACAGAGGAAGTTGCGATACGGATTATTGGAGCAGGAGAACAGGATCACAATGGGGGGTTAGGTTCTGTTTCTTCACCGTCACAAAATCAGCTTGGAGATGATGAATTGATGGGAAATAGAGGTGGAATGGCCGCATTGGATGACGATGAAGAGGGTAGCAGTGGAATCAGTGTTGGCGAGAGAGTTCCCCTAGTGTCTTCTTCATCATCTTTGGCCAGTAGTGGACAGGTTGGGAATGGCTTGGAAAGTAACACTAGGGATTCATCATCTCACCAGAGGTATGATATTCAGCAGGTTGCAAAATGGATTGAGCAGATTCTTCCTTTCTCGCTATTGTTGTTGGTTGTGTTCATTCGTCAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATTTCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCTCTAAAGGGAGATAGGAAAGTCTTTTTTCTTGTCAGTATCTCTATTGTCTTCCTGCTTCATGTAATATGCATTTACTGGTGGTATCAAAATGATGATCTTTTATACCCACTGGTCATGCTTCCTCCAAAAGCAAGACCTCGTTTCTGGCATGCAGTATTCATCATTTTGGTTAATGACACATTGGTGCGGCAAGCAGCAATGTCTTTCAAGTGTTTGCTACTTATATATTTTAAAAACGGAAGAGGTCATAGCTTCCGTCAGCAGGGTCAAATATTAACTCTGGTTGAGTACACACTACTGTTGTATCGTGCCTTGTTGCCTACACCGGTTTGGTACCGATTTTTCTTAAACAAGGATTATGGAAGTCTCTTTTCATCACTGACCACAGGGTTGTATTTAACTTTCAAGCTAACTTCTGTCATTGAGAAGGTTCAATACTTCTTTTCTGCCTTGAAAGCATTGTCAAGAAAGGATATTCACTATGGGGTTTATGCTTCAATGGAGCAGGTAAATGCTGCAGGTGACCTATGTGCTATATGCCAGGAGAAGATGCATGCTCCTATCCTGTTACGCTGTAAACACATTTTCTGCGAGGAGTGTGTGTCAGAATGGTTTGAGAGAGAAAGAACTTGTCCATTATGCCGAGCATTGGTGAAACCTGCTGATATGCGGACATTTGGGGATGGATCAACAAGTCTGTTTTTTCAGTTATTTTAA | 1485 | 0.4337 | METSGPNTDQYAFSSSSSSAGGVNTANSDSSASSVTWYGMRLPSGSPFRYPLSFLLDYSGILRSSSSTHDSEAVIANNEVAASELQPHLQIPSLGPTAATACSGSRSSSTEEVAIRIIGAGEQDHNGGLGSVSSPSQNQLGDDELMGNRGGMAALDDDEEGSSGISVGERVPLVSSSSSLASSGQVGNGLESNTRDSSSHQRYDIQQVAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWISAVMFKSNEIVKKQTALKGDRKVFFLVSISIVFLLHVICIYWWYQNDDLLYPLVMLPPKARPRFWHAVFIILVNDTLVRQAAMSFKCLLLIYFKNGRGHSFRQQGQILTLVEYTLLLYRALLPTPVWYRFFLNKDYGSLFSSLTTGLYLTFKLTSVIEKVQYFFSALKALSRKDIHYGVYASMEQVNAAGDLCAICQEKMHAPILLRCKHIFCEECVSEWFERERTCPLCRALVKPADMRTFGDGSTSLFFQLF | 494 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa05g1789 | 494 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 414 | 482 | IPR013083 | - | |
| Bisa05g1789 | 494 | SMART | ring_2 | 433 | 470 | IPR001841 | - | |
| Bisa05g1789 | 494 | MobiDBLite | consensus disorder prediction | 178 | 198 | - | - | |
| Bisa05g1789 | 494 | MobiDBLite | consensus disorder prediction | 1 | 31 | - | - | |
| Bisa05g1789 | 494 | ProSiteProfiles | Zinc finger RING-type profile. | 433 | 471 | IPR001841 | - | |
| Bisa05g1789 | 494 | CDD | RING-HC_RNFT1-like | 431 | 471 | - | - | |
| Bisa05g1789 | 494 | SUPERFAMILY | RING/U-box | 424 | 477 | - | - | |
| Bisa05g1789 | 494 | Pfam | Zinc finger, C3HC4 type (RING finger) | 431 | 474 | - | - | |
| Bisa05g1789 | 494 | PANTHER | UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN | 24 | 494 | IPR044235 | GO:0061630|GO:1904294 | |
| Bisa05g1789 | 494 | MobiDBLite | consensus disorder prediction | 122 | 166 | - | - | |
| Bisa05g1789 | 494 | ProSitePatterns | Zinc finger RING-type signature. | 448 | 457 | IPR017907 | - | |
| Bisa05g1789 | 494 | MobiDBLite | consensus disorder prediction | 127 | 143 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa05g1789 | Bisa-ChrBisa05 | 33399578 | 33407107 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa05g1789 | 1 | 494 | C3H Transcription Factor Family | AT5G01960 | 57.778 | 0.0 | 558 |