Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1777 ATGGAGAAAGAGTTGGTCGAATTATACGAAGCAGTGAAGAAGTCGGCGGACGCGGTGAGCACCACCGATAATGAACATGAAGAAAGTCGATGTATTGAAGCTCTCGAGCTGCTAAAGAAATTCCCCGTCAATTATCAAATTCTTGTTTCCACCCAGGTGGGTAAACATCTTAAACATCTCACCAAACATCCAAGGAAGAAAATTCGGGTCTTTGCTTCTCACCTGGTTGAGATATGGAAAGAAATTATTGTCAAAGAAACAATCAAGAATAAGAATGTAAACTCAGATAACGGGGAGACCACTAAAGCAGGGAAACTTCAAAAGGCACCTTCAGTGAAGATTGAGAAAGCTGTAAAGGATGAAACTACCAAGGTCGAGAAAACTATTAATAACTGTAAGTCAATCTCAGAAGATACAAAGCAAGAAGTGCAAAAAGTGGGTGTCAAAATTGAGAAAACTAATTTTGCTGCAATTGTTAAGGCAGAAAAGACAACAGCCATGGACAAGAAGCAAGTTTCTGCAGTGAAGAAAGCAGTACCAAGCCCAGCTGCTCCCCCAAAGTTGATGACTATGATTAAATCTAATGATCCTAAGCGAGACAAGGTAAGGGAAATTATGTTAGAGGCTTTCTCCAAGGTTTCTGGGGAGGCTGATGAAAAAATAATAGATCAAGTTAAAGCAACTGACCCTATTCATGTTGCTGTCACCGTGGAATCTATACTATTTGAGAAGTGGGGTTCTTCTACTGGGGCTCACAAGTTCAAATATAGGTCCTTAATCTTTAATCTGAAGGATCCAAATAACCCAGATTTTCGGAGAAAAGTTCTACTTGGAGATGTTGAGCCACAGAAACTGATCAACATGAGTGTGGCGGAAATGGCTAGCGAGCAAAGGAGGAAAGAGAATCATGAAATTGAGAAGAAAGCTTTATTTGAGTGTGAGCGTTCTGATCATACTGAAGCCACGACTGATCAGTTTAAATGTGGTCGATGTGGTCAAAGGAAGTGCACCTATTATCAAATGCAGACTCGCAGTGCTGATGAACCTATGACAACCTATGTCACATGCACAGTCTGCAGTAATCGTTGGAAGTTTTGTTAG 1101 0.4069 MEKELVELYEAVKKSADAVSTTDNEHEESRCIEALELLKKFPVNYQILVSTQVGKHLKHLTKHPRKKIRVFASHLVEIWKEIIVKETIKNKNVNSDNGETTKAGKLQKAPSVKIEKAVKDETTKVEKTINNCKSISEDTKQEVQKVGVKIEKTNFAAIVKAEKTTAMDKKQVSAVKKAVPSPAAPPKLMTMIKSNDPKRDKVREIMLEAFSKVSGEADEKIIDQVKATDPIHVAVTVESILFEKWGSSTGAHKFKYRSLIFNLKDPNNPDFRRKVLLGDVEPQKLINMSVAEMASEQRRKENHEIEKKALFECERSDHTEATTDQFKCGRCGQRKCTYYQMQTRSADEPMTTYVTCTVCSNRWKFC 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1777 366 SMART TFS2_5 8 85 IPR003617 GO:0005634
Bisa05g1777 366 SMART mid_6 200 304 IPR003618 GO:0006351
Bisa05g1777 366 SUPERFAMILY Elongation factor TFIIS domain 2 181 296 IPR036575 GO:0006351
Bisa05g1777 366 ProSiteProfiles TFIIS N-terminal domain profile. 1 86 IPR017923 -
Bisa05g1777 366 FunFam Probable Transcription elongation factor S-II 295 366 - -
Bisa05g1777 366 NCBIfam transcription elongation factor S-II 13 366 IPR006289 GO:0003676|GO:0005634|GO:0006368
Bisa05g1777 366 Gene3D - 295 366 - -
Bisa05g1777 366 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 1 98 IPR035441 -
Bisa05g1777 366 ProSiteProfiles TFIIS central domain profile. 198 321 IPR003618 GO:0006351
Bisa05g1777 366 Pfam Transcription factor S-II (TFIIS) 326 364 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bisa05g1777 366 ProSiteProfiles Zinc finger TFIIS-type profile. 324 364 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bisa05g1777 366 PANTHER TRANSCRIPTION FACTOR S-II ZINC FINGER DOMAIN-CONTAINING PROTEIN 16 366 - -
Bisa05g1777 366 CDD Zn-ribbon_TFIIS 320 365 - -
Bisa05g1777 366 SMART Cys4_2 326 365 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bisa05g1777 366 SUPERFAMILY Zinc beta-ribbon 304 364 - -
Bisa05g1777 366 Gene3D - 184 294 IPR036575 GO:0006351
Bisa05g1777 366 SUPERFAMILY Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 10 97 IPR035441 -
Bisa05g1777 366 Pfam Transcription factor S-II (TFIIS), central domain 195 312 IPR003618 GO:0006351
Bisa05g1777 366 CDD TFIIS_I 9 83 - -
Bisa05g1777 366 ProSitePatterns Zinc finger TFIIS-type signature. 328 363 IPR001222 GO:0003676|GO:0006351|GO:0008270
Bisa05g1777 366 PIRSF TFIIS 2 366 IPR035100 -
Bisa05g1777 366 Pfam TFIIS helical bundle-like domain 34 83 IPR017923 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1777 Bisa-ChrBisa05 33199314 33202536 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Bisa05g1777 TFIIS_M 6.6e-31 No_clan