Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1687 ATGACACCTGATGCTGCCTTCGAGGCATTTCTTTCTGGCTCATGGAAAGCTTTGGAACTCATAATAATTAAGGCAGGAACTTTGACCATACATTTTATTGATCAGCACAATATGGTTTTGGAGAAAGGCCCCACTTCGGGCATTCGAATAAGGTCAAGGAAAGCTACTTTATCAGATTGCTCCTGCTTTTTAAGAAGTGGAATTGACATATGTGTACTATCAGCCTCTCAACAGGCTGATAATTCAGAGGAAATCAGTCTTGAGCCTGTGTGGACTGATGCTAGAATAAGTTCTATACAGAGAAAGCCCCATGAATCTGAGTGCTCGTGTGAGTATTTTGTGAACTTCTATGTTAATCAAAGTTCTTTTGATCCAGAGATGAGAACTCTTAACAAGGAGATCAAAGTAGTTGGAATAGATCAAATTTCAATCCTCCAAAAACTTGAACGTAACCCTAGTGCAGTTCAGCCTTATCGGTGGGATTCATCTGAGGACTGCTTTGCTGCACCAGAGACTAAATTGCTTGCAGGAAAATTTTTATCTGATATTTCATGGTTAGTTGTTGCATCAGTTATAAAGCAGGTTTCATTCTGTGTAAGATCTGTAGAAAACAAGATTGTGTATCAAATTTTGGGAGACAATAATTCTGGCTCTTTTTTCAACTCTGATTCTCATATACATGTTGTAAATTTCAGAGTGGACAATGGGATGTTAGTACCTGTTGTTGCTCAAGTTGTTTCATCTAACAACAATAGGGTAGGCCAAGCACATGATGAGGTCTCACCAGTTTCTATCCTTGAGGGCTTACGACGTTCCAAACGTCGAAATGTACAACCTGAACGTTACCTTGGTTTTGATGATATCTCTAAGTCAGGTATTGGATATGTTCGAATTCGACCATACAAGACAAACACAAGAAAAGATGATGACAATGATGATGATGGTTTGCATGAAATTTGTCCACAAGACATTGATGCTAGTGAAAATCTTAATACGATAAATCCCTTCCAGGAGGTCCTAGTTTACAATAGCAGGGCTGAAACTTGGGAGGTAAAGTCCGGTGATGTTGATAAAAAAGGACATGAAGCTCAACTTGCCAGTGATCCTCGGCCTGATGAAGGTGATCCAATAGCCCTTGACCATTCTCATCTTAATGCCAAGATTACTGAAAATCCTGGATATGGAAACTGTGATTTTTCCAAATATGATCATCTGATTCATAACCCTACACTGAAGAGGAAAATTATTGATCTACTGACATTTAAACCCTCTGATAGTTCTGGAAAGATTCCTGATGTTGAAAATTCTGTAAAAGAGATTGGTGGTAAATCTTCTAGACGCTTTTATAGTTATGGCACCAGTAATGTGCAGAGGAAGGATTTATCAGGTCTGGCAGATGAGGATATTGGAAGTAGATGGGAAGGTATGCATTTTAATAAAGACAACCAAGGGAGAAAATATCATTCAACAACTACAAAAATTAGAAGTCCTGAGGAAAAAATAACACACAAAGACAGATCCTCAAGTAGTGCTGCCTACAAGGAATTGATAGATTTATACTTAAAGGATATTGATACAACACCGAATAAAGAGGTGCAATCTATAACTGACCAGTGGGAAGAATTCAAGGCAACAAGCAACCATGGACAAAACAGTGAAACAGAGGCTGAGGAAGAGGTTTCTGAAATTGATTTGTTGTGGAGAGAAATGGAAGTTGCATCAGCATCTTGTCATGTTCTTGATGACAACGAGGGTACAAACGTTGCAATTTTTGCTAAGACCATGGAAAACTCCTGTCAACATGAGTTTAGACTGAATGAAGAAATTGGAATTTACTGCCATAGATGTGGCTTTGTGAGCACTGAGATGAAAGACATTTCACCACCTTTTATGCAATACTCAGGTTGGCACCAAGGAGAAAAGCAGTCTAGGGCACAATATTCGGAGGCAAAGGCTGATGAAGATGACGGCTTACATCTTTTCTTGACTCATGCTTCTAATAAACCTATATCTGAAGAAAATGATAATATCTGGGAACTGATACCCGAACTTACAAGGAAGTTACATGTCCACCAAAAAAATGCTTTTGAATTTCTTTGGAAAAATATTGCTGGATCTGTGGAACCAGCACTTATGAAAAATGAATCCAAAAGAAGAGGTGGTTGTGTGATATCTCATTCTCCTGGAGCTGGAAAAACTTTTCTAATTATTGCATTTCTTGTTAGCTACTTGAAGTTGTTCCCGGGGAAGAGACCTCTGGTCCTTGCTCCAAAGACAACACTTTATACCTGGTATAAAGAATTTATCAAATGGGAAATTCCCATACCAGTGCATCTGATTCACGGTCGTAGAACCTCCAGAGTGCGCAAGAAGAAATCAATGGTTTTTCCTGGCATTCCAAAACCCTCTGAAGATGTCAAGCATGTCTTGGACTGTCTGGAAAAAATACAGAAGTGGCATGCACAGCCAAGTGTTCTAGTCATGGGTTATACTTCCTTTTTTACACTGATGCGAGAGAATACAAAGTTTGCACACAGAAAGTATATGGCTAAAATTCTGAGGAGAAGTCCGGGGATCCTGGTTCTGGATGAAGGGCACAATCCGAGAAGCACGGAGTCAAATTTGAGGAAAGCTTTGATGAAAGTAGAGACAGAATTGAGAATACTACTTTCAGGTACATTGTTTCAGAATAATTTTTGTGAATACTTCAACACTCTCTGCTTGGCAAGACCAAAGTTTGCTTATGAAGTGCTGAAAGAGTTAGACCCAAAATATGAAAGGAGAATGAAAGGAGGAGAAAAACCATGGAACTTAATCGAATCACGGTCACGAAAATTGTTCTTAGATAAAATTGCGAGAAAAATTGACTCAGATATTAGTGATGAGAGGATGCAGGGTCTAAACATGTTAAGGAATATCACAAACAGTTTCATAGATGTCTATGAAGGTGGAAGTTCTGACAGTCTTCCCGGTTTGCATGTTTATACATTGTTGATGAATATGACTGATTGTCAACGAGAGATTTTTCAGGAACTTTATGAAAAAATGGCTGGGTTCAATGGATATCCTCTGGAGATAGAGCTTTTGATAACCCTTGGATCAATACACCCGTGGTTAATCAAAACTGCTGCATGTGCTCATAAGTTTTTAAATGTGGGGCAACTGAGGGAGCTAGAAAAGTACAAGTTTGATTTGAAGGTCGGACCAAAAGTGCGATTTGTTCTGAGCCTTGTATATCATGTAGTGAAGGAGGAGAAGATACTAATCTTTTGTCACAACCTTGCACCTGTGAGATTATTTGTAGAACTATTTGAGAAATTCTTTGGATGGCAGAGAGGTCGTGAAGTTTTGGTACTTTCTGGGGAACTAGAGCTCTTCGAACGTGGGAGAGTGATGGATAAGTTTGAGGAGCTTGGTGGAGCATCAAAGATACTCCTTGCTTCAATTACAGCTTGTGCTGAAGGCATTAGTTTGACGGCAGCTTCTCGGGTGATTTTGTTGGACTCGGAATGGAATCCATCAAAGACCAAGCAGGCTATTGCTCGTGCATTTCGTCCTGGTCAGCAAAGAGTAGTGTACGTGTATCGGCTACTGGTGACAGGAACACTGGAGGAAGACAAGTATCGCAGAACCACTTGGAAGGAGCGGGTTTCAAGCATGATTTTTAGTGAGGCTTTTGTGGAGGATCCTTCCCGATGGCAGGCAGAAAAGATCGAAGATGACATACTACGGGAGATGATTGAGGAAGACCGGTCTAAAATATTCCATATGATAATGAAAAATGAGAAGGCTTCAACCAACTAA 3804 0.3972 MTPDAAFEAFLSGSWKALELIIIKAGTLTIHFIDQHNMVLEKGPTSGIRIRSRKATLSDCSCFLRSGIDICVLSASQQADNSEEISLEPVWTDARISSIQRKPHESECSCEYFVNFYVNQSSFDPEMRTLNKEIKVVGIDQISILQKLERNPSAVQPYRWDSSEDCFAAPETKLLAGKFLSDISWLVVASVIKQVSFCVRSVENKIVYQILGDNNSGSFFNSDSHIHVVNFRVDNGMLVPVVAQVVSSNNNRVGQAHDEVSPVSILEGLRRSKRRNVQPERYLGFDDISKSGIGYVRIRPYKTNTRKDDDNDDDGLHEICPQDIDASENLNTINPFQEVLVYNSRAETWEVKSGDVDKKGHEAQLASDPRPDEGDPIALDHSHLNAKITENPGYGNCDFSKYDHLIHNPTLKRKIIDLLTFKPSDSSGKIPDVENSVKEIGGKSSRRFYSYGTSNVQRKDLSGLADEDIGSRWEGMHFNKDNQGRKYHSTTTKIRSPEEKITHKDRSSSSAAYKELIDLYLKDIDTTPNKEVQSITDQWEEFKATSNHGQNSETEAEEEVSEIDLLWREMEVASASCHVLDDNEGTNVAIFAKTMENSCQHEFRLNEEIGIYCHRCGFVSTEMKDISPPFMQYSGWHQGEKQSRAQYSEAKADEDDGLHLFLTHASNKPISEENDNIWELIPELTRKLHVHQKNAFEFLWKNIAGSVEPALMKNESKRRGGCVISHSPGAGKTFLIIAFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEIPIPVHLIHGRRTSRVRKKKSMVFPGIPKPSEDVKHVLDCLEKIQKWHAQPSVLVMGYTSFFTLMRENTKFAHRKYMAKILRRSPGILVLDEGHNPRSTESNLRKALMKVETELRILLSGTLFQNNFCEYFNTLCLARPKFAYEVLKELDPKYERRMKGGEKPWNLIESRSRKLFLDKIARKIDSDISDERMQGLNMLRNITNSFIDVYEGGSSDSLPGLHVYTLLMNMTDCQREIFQELYEKMAGFNGYPLEIELLITLGSIHPWLIKTAACAHKFLNVGQLRELEKYKFDLKVGPKVRFVLSLVYHVVKEEKILIFCHNLAPVRLFVELFEKFFGWQRGREVLVLSGELELFERGRVMDKFEELGGASKILLASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQQRVVYVYRLLVTGTLEEDKYRRTTWKERVSSMIFSEAFVEDPSRWQAEKIEDDILREMIEEDRSKIFHMIMKNEKASTN 1267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1687 1267 Gene3D - 661 952 IPR038718 -
Bisa05g1687 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 674 928 IPR027417 -
Bisa05g1687 1267 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1074 1258 IPR001650 -
Bisa05g1687 1267 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 41 1266 IPR044567 GO:0080188
Bisa05g1687 1267 Pfam SNF2-related domain 687 1016 IPR000330 GO:0005524|GO:0140658
Bisa05g1687 1267 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 713 912 IPR014001 -
Bisa05g1687 1267 SMART helicmild6 1098 1187 IPR001650 -
Bisa05g1687 1267 MobiDBLite consensus disorder prediction 354 374 - -
Bisa05g1687 1267 Pfam Helicase conserved C-terminal domain 1070 1186 IPR001650 -
Bisa05g1687 1267 Gene3D - 990 1267 IPR027417 -
Bisa05g1687 1267 CDD DEXHc_ATRX-like 688 935 - -
Bisa05g1687 1267 CDD SF2_C_SNF 1062 1198 - -
Bisa05g1687 1267 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 987 1255 IPR027417 -
Bisa05g1687 1267 SMART ultradead3 684 928 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1687 Bisa-ChrBisa05 31454246 31460109 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1687 1100 1217 RAD5 or RAD16-like Gene Family AT5G43530 39.831 1.69e-13 73.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa05g1687 SNF2_N 3.6e-18 CL0023