Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1684 ATGGACTCTGACTTGCCCAACAAAGCATTAACGAGCACGCGATTTTCAGAGCTCAACCCGCCACTTTCCGAACCGGTTCTCGAAGCCCTATCGGAGTCGGGGTTTGCGTTCTGCACGCCGGTTCAAGCCGCCACGATACCTTTACTATGTAGTTTCAAGGACGTGACTGTCGACGCCGCCACCGGTTCAGGCAAAACCCTGGCATTTGTCGTCCCACTTGTTGAGATTCTACGCCGGTCCTGTTCCAATCCTAAACCTCATCAGGTACTTGGAGTAATTATATCTCCCACAAGGGAGCTATCATCCCAAATTTACCATGTTGCACAACCTTTCATTAGAACTTTAGTTAATTATAAGTCCATGCTCCTTGTTGGTGGAGTAGATGTAAAAGCAGACATGAAGAAAATAGAAGAAGAAGGAGGGAATATATTGATCGGCACACCTGGACGGCTGTATGACATAATGGATCGGATGGATGTATTGGATTTTAAAAGCCTTGAGATTTTAATTTTAGATGAAGCTGATAGGCTCCTTGATATGGGATTCCAGAAGCAGATAAGTTCCATTATATCTCTCTTACCAAAGCTTCGCAGAACAGGTCTTTTCTCCGCTACTCAAACTGAGGCTGTTGAAGAGCTTTCTAAAGCAGGATTGAGGAACCCTGTGAGGGTTGAAGTTAGAGCAGAATCAAAACCAGTAAATGATCCTGCAGCACCACAACAACTAGCCTCTTCAAAGACACCATCAGGACTTCTCATTGAGTACTTGGAATGTGAGGCTGATAAGAAACCATCACAGCTTGTAGATATCATAATGAAGAACTGGTCAAAGAAAATGATAATATATTTCATGACCTGTGCCTGTGTTGACTATTGGGGAGTTGTTCTTCCTTGCCTTTCTGGTCTAAAAGGTTTCTCCTTGATTCCCCTTCATGGAAGGATGAAGCAGGCTGCCAGGGAGAAAGCATTAGCTTCATTTACATCTCTTTCAAATGGAGTTCTTCTGTGTACAGATGTTGCAGCACGGGGACTAGACATACCAGGTGTTGATTGTATAGTGCAGTATGATCCCCCTCAAGATCCAAATGTTTTCATACATAGAGTTGGACGAACTGCTCGACTGGGTAAACAAGGACATGCCATTGTCTTCTTATTGCCAAAGGAGGAATCTTACGTTGAGTTCCTGCATATAAGAAGAGTCCCCCTTCAAGAGAGAGGTTGCTCTAACGATGCCTCTGATGTTGTTCCTCTGATCCGTTCTGCTGCAAAAAAGGATCGTGATGTAATGGAGAAGGGACTCCGGGCATTTGTTTCTTATATTCGAGCATATAAAGAGCATCACTGCTCTTATATTTTTAGGTGGAAAGAACTTGAAATTGGTAAGTTGGCCATGGGATATGGCTTATTGCAGCTTCCTTCAATGCCAGAGGTAAAACAACATTCACTTTCCACGGAGGGTTTTGTACCAGTTGAAGACATTAATTTTGAGGACATTAAGTACAGGGATAAAGCTCGTGAGAAACAAAGGAGAAAGAACTTGCAAGCAAAGAAAGAAGGCAAAGAGAAAGAGGCAAAACCTCAAAAACCCAACAAAACCCTGAATGCCCCCATAACAAGGAAAAAGACAGCTCGACAGAGACGTGCTCAGCAGACAGTTGAAGATGAAGATGAGCTGATGCGAGAATATCGTTTATTGAAAAAATTGAAAAAAGGGACTATAGATGAGAATGAGTATGCCAAGTTAACAGGCACCGAGGAATTACTTTGA 1767 0.4307 MDSDLPNKALTSTRFSELNPPLSEPVLEALSESGFAFCTPVQAATIPLLCSFKDVTVDAATGSGKTLAFVVPLVEILRRSCSNPKPHQVLGVIISPTRELSSQIYHVAQPFIRTLVNYKSMLLVGGVDVKADMKKIEEEGGNILIGTPGRLYDIMDRMDVLDFKSLEILILDEADRLLDMGFQKQISSIISLLPKLRRTGLFSATQTEAVEELSKAGLRNPVRVEVRAESKPVNDPAAPQQLASSKTPSGLLIEYLECEADKKPSQLVDIIMKNWSKKMIIYFMTCACVDYWGVVLPCLSGLKGFSLIPLHGRMKQAAREKALASFTSLSNGVLLCTDVAARGLDIPGVDCIVQYDPPQDPNVFIHRVGRTARLGKQGHAIVFLLPKEESYVEFLHIRRVPLQERGCSNDASDVVPLIRSAAKKDRDVMEKGLRAFVSYIRAYKEHHCSYIFRWKELEIGKLAMGYGLLQLPSMPEVKQHSLSTEGFVPVEDINFEDIKYRDKAREKQRRKNLQAKKEGKEKEAKPQKPNKTLNAPITRKKTARQRRAQQTVEDEDELMREYRLLKKLKKGTIDENEYAKLTGTEELL 588
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1684 588 PANTHER RNA HELICASE 11 517 - -
Bisa05g1684 588 Pfam Domain of unknown function (DUF4217) 418 474 IPR025313 -
Bisa05g1684 588 CDD DEADc_DDX55 26 224 - -
Bisa05g1684 588 Gene3D - 255 486 IPR027417 -
Bisa05g1684 588 Gene3D - 3 227 IPR027417 -
Bisa05g1684 588 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 266 422 IPR001650 -
Bisa05g1684 588 MobiDBLite consensus disorder prediction 504 528 - -
Bisa05g1684 588 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 91 394 IPR027417 -
Bisa05g1684 588 SMART DUF4217_3 413 476 IPR025313 -
Bisa05g1684 588 CDD SF2_C_DEAD 254 384 - -
Bisa05g1684 588 MobiDBLite consensus disorder prediction 504 556 - -
Bisa05g1684 588 FunFam RNA helicase 9 227 - -
Bisa05g1684 588 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 15 43 IPR014014 GO:0003724
Bisa05g1684 588 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 170 178 IPR000629 -
Bisa05g1684 588 SMART helicmild6 293 375 IPR001650 -
Bisa05g1684 588 Pfam DEAD/DEAH box helicase 39 213 IPR011545 GO:0003676|GO:0005524
Bisa05g1684 588 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 46 224 IPR014001 -
Bisa05g1684 588 Pfam Helicase conserved C-terminal domain 263 375 IPR001650 -
Bisa05g1684 588 Coils Coil 503 525 - -
Bisa05g1684 588 SMART ultradead3 34 234 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1684 Bisa-ChrBisa05 31281034 31285559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1684 17 389 Eukaryotic Initiation Factors Gene Family AT1G72730 29.708 4.22e-43 157
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g1684 05 31281034 31285559 Bisa05g1684 05 31281034 31285559 ECH