Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1652 ATGCATGGATCAGATTCTGAGTCCGACTCGAAGGTAATCTGGATTAGGCGCACCGAAATGAGGGCTTCCGGCATCAATGGGGAAGAGGCAGGCATAATGCTAGCAGATCCGGGTATCGTGGAAGCAGGAGTCAGCAATATTCTCTCTTTGGATTTGGAACACCTCCTCAGTCTGAGGAATAAGCTTTGTGGGTTTGATTTTTGGTACAAGTTCGAAACTGTTGTTGGAAATTTGGTTGTGGGGGTTGCTTGTTTGGACTCTGGCATGTGTAGTGGTTCAAAAAGTAAACTTTCTCCCTCAAACAACGTCATGGAAAGTGAGTTTCAGGCACAGAATCTTGATAATCTCTACAACATCTCAATTTTGCTTGAGCTGTCTTCAACTGATGATCTCGAAACTTTCCGAAGCCTCGTGGAAGAGAAGAGTTTTGATGTGAACGAGGCAAGCTTTTGGTATGGAAGAAGAATCGGATCAAAGAAGATGGGGTTGGAAAAGAGGACTCCCCTCATGATTGCTTCTTTATTTGGAAGCACCAAGGTGCTCAAGTATCTTATTGAAACTGGCAGAGTTGATGTGAACAAGGCCTGTGGTTCTGATAGGGCCACTGCTCTCCACTGTGCTGTTGCTGGTGGTTCAGAATCTTCGCTTCAGATTGTGAAGCTCTTGCTTGATGCACATGCTGATGCTGACTGCCTTGATGCTAGTGGAAATAAGCCTGTCAATCTGATTGCTCATGCCTTTAGTTCTTCCTCCAATTCACGGAGGAAGGCAATGGAATCATTGCTGAGAGGTGATGAATTAGATGGGGAAAGACATCTAATCATCAACCAGGAGGTGGAAGTACAGAAACCTGCAGTGCCTTCTTTATCATCGAAGGAAGTAGCAGAGAAGAAAGAATTTCCTGTCGATATATCATTGCCTGACATAAACAATGGTATATATGGAACAGATGAGTTTAGGATGTTTAGTTTCAAGGTGAAGCCGTGTTCAAGAGCATATTCCCATGACTGGACTGAGTGCCCATTTGTTCATCCAGGGGAGAATGCAAGGAGGAGAGACCCGCGGAAATACCCCTACAGCTGTGTTCCCTGCCCAGAGTTTCGCAAAGGAGCCTGCCCAAAGGGGGATTCTTGTGAGTACGCACACGGTGTCTTTGAGTCGTGGCTCCATCCTGCCCAATACCGAACAAGGCTTTGCAAGGATGAAACTGGCTGCTCAAGGAAAGTTTGCTTCTTTGCTCACAAACCGGAAGAGTTACGCCCAGTGTATGCTTCCACTGGGTCTGCTATGCCTTCACCAAAATCCTTTTCGGCTAGTGCACTTGACACGACAGCTATGAGTCCGTTGGCTCTGAGCTCCTCATCTTTGCCAATGTCCACTATTTCAACACCCCCTTTGTCTCCTTTGGCAGCTTCATCTCCCAAGAGTGGAAGCTTGTGGCAGAACAAAATAAACCTCACCCCACCTTCCTTGCAGCTCCCAGGTAGTCGGCTGAAGGCTGCTTTAAGTGCTAGGGATCTTGATCTTGAGATGCAACTGCTTGGATTAGAGAATTCTGCTAGCCAAAAGCAGCAATTAATAGAAGAGATGGCTCGAATCTCTTCCCCATCTTTCCGGAATACAGAATATGGCAGGATTGGTGATCTGAAGTCAACTAACCTTGATGACCTCTTGGGATCTACTGATACTTCTGTTCTATCTCAACTTCATGGATTTTCAGCACAATCTCCCAAGGGCCTTCAAATTCACCAAAACATGAACCACCTTCGAGCAAGCTATCCAACTAACCTCCCTTCCCCTCCAGCAAGAAGCTCTGCAACATATGGGTTTGACTCATCAGCTGCTGTGGCAGCTGCAGTGATGAATTCCAGAGCTGCAGCCTTCGCAAAGCGAAGCCAAAGTTTTATCGATCGAGGGGCAATGACCCACCATCTGGGGCAGTCTTCAGCTTCCATCCCCACCAGTAGGGTCTCCTCTACCCTTTCAGATTGGAGATCCCCTGATGGGAAATTGGATTGGGGCATGAATGGTGATGAGTTGAACAAACTGAAAAAATCTGCTTCTTTTGGGTTCAGAAACAATGGAAAAACTGACATCTCCGTGGCAGGGTCAGAAAATTTCGAACCAGATGTCTCATGGGTTCATTCGTTGGTTAAAGATGTTCCTTCTGAGAAGCAGCAGCAATATGATCTCAATAGAGAGATGCTTCCTCCATGGGTGGAGCAGCTGTATAGAGAACAGGAGCAGATGGTAGCCTAA 2259 0.4653 MHGSDSESDSKVIWIRRTEMRASGINGEEAGIMLADPGIVEAGVSNILSLDLEHLLSLRNKLCGFDFWYKFETVVGNLVVGVACLDSGMCSGSKSKLSPSNNVMESEFQAQNLDNLYNISILLELSSTDDLETFRSLVEEKSFDVNEASFWYGRRIGSKKMGLEKRTPLMIASLFGSTKVLKYLIETGRVDVNKACGSDRATALHCAVAGGSESSLQIVKLLLDAHADADCLDASGNKPVNLIAHAFSSSSNSRRKAMESLLRGDELDGERHLIINQEVEVQKPAVPSLSSKEVAEKKEFPVDISLPDINNGIYGTDEFRMFSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPKSFSASALDTTAMSPLALSSSSLPMSTISTPPLSPLAASSPKSGSLWQNKINLTPPSLQLPGSRLKAALSARDLDLEMQLLGLENSASQKQQLIEEMARISSPSFRNTEYGRIGDLKSTNLDDLLGSTDTSVLSQLHGFSAQSPKGLQIHQNMNHLRASYPTNLPSPPARSSATYGFDSSAAVAAAVMNSRAAAFAKRSQSFIDRGAMTHHLGQSSASIPTSRVSSTLSDWRSPDGKLDWGMNGDELNKLKKSASFGFRNNGKTDISVAGSENFEPDVSWVHSLVKDVPSEKQQQYDLNREMLPPWVEQLYREQEQMVA 752
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1652 752 Pfam Ankyrin repeats (3 copies) 131 230 IPR002110 GO:0005515
Bisa05g1652 752 ProSiteProfiles Ankyrin repeat profile. 164 188 IPR002110 GO:0005515
Bisa05g1652 752 ProSiteProfiles Ankyrin repeat region circular profile. 164 188 - -
Bisa05g1652 752 FunFam Zinc finger CCCH domain-containing protein 66 316 384 - -
Bisa05g1652 752 Gene3D - 118 266 IPR036770 -
Bisa05g1652 752 MobiDBLite consensus disorder prediction 645 665 - -
Bisa05g1652 752 SMART c3hfinal6 393 416 IPR000571 GO:0046872
Bisa05g1652 752 SMART c3hfinal6 358 384 IPR000571 GO:0046872
Bisa05g1652 752 ProSiteProfiles Zinc finger C3H1-type profile. 358 385 IPR000571 GO:0046872
Bisa05g1652 752 Gene3D - 359 421 - -
Bisa05g1652 752 PANTHER UNKEMPT FAMILY MEMBER 124 721 IPR045234 -
Bisa05g1652 752 SUPERFAMILY Ankyrin repeat 115 245 IPR036770 -
Bisa05g1652 752 ProSiteProfiles Ankyrin repeat profile. 199 234 IPR002110 GO:0005515
Bisa05g1652 752 SMART ANK_2a 117 147 IPR002110 GO:0005515
Bisa05g1652 752 SMART ANK_2a 164 194 IPR002110 GO:0005515
Bisa05g1652 752 SMART ANK_2a 199 231 IPR002110 GO:0005515
Bisa05g1652 752 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 363 383 IPR000571 GO:0046872
Bisa05g1652 752 ProSiteProfiles Ankyrin repeat region circular profile. 199 233 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1652 Bisa-ChrBisa05 30674331 30679208 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1652 117 732 C2H2 Transcription Factor Family AT5G12850 40.091 9.37e-138 421
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa05g1652 Ank_2 1.3e-08 CL0465
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g1652 05 30674331 30679208 Bisa05g1652 05 30674331 30679208 ECH