Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1651 ATGCAGGACTTTGGCATGTTGAGTAGTTCAAAAAGTAAACTTTCTTCCTCAAACAACGTCATGGAAAGGGAGTTTCAGAAGAAGAAACATGATGACCTTTATAACATCTCACTTTTGCTTGAGCTGTCTGCAGCCGATGATCTTGAAGCTTTCAAAAGCCAAGTAGAAGAGAAGGGTTTTGATGCTAATGAGGCGAGCTTTTGGTACGGAAGAAGAATCGGATCAAAGAAGATGAGTTTCGAAAAGAGGACCCCCCTCATGATTGCTTCTTTATTTGGAAGCACCAAGGTGCTCAAGTATATAATTGATACTGGTATAGTTGATGTGAACAGGGCCTGTGGTTCTGATAGGGCCACTGCTCTCCACTGCGCAGTTGCTGGTGGCTCGGAATCTTCGCTTCAGATTGTTAAGCTTTTGCTTGATGCACAGGCAGATGCTGACTGCCTTGATGCTAGTGGAAATAAGCCTGTCAGTCTGATTGCTTCTGCCTCAATTCCTTCGTCCAATTCACGAAGGAAGGCAATGGAGTTGTTGCTGAGAGGTGATGAATTAGATGGGGAAAGACATCAAATCATCAACCAAGAGGTGGAGCCACAGAAACTTGCAGTACCTTCTTTATCATCAAAGGAAATCACAGAGAAGAAAGAATATCCTGTTGATATATCATTGCCTGACATAAACAATAGTATATATGGAACGGATGAGTTTAGGATGTACAATTTCAAGGTGAAGCCATGTTCAAGGGCATACTCCCATGACTGGACCGAGTGCCCATTTGTTCATCCAGGGGAGAATGCGAGGAGGAGAGACCCACGGAAGTACCCCTACAGCTGTGTTCCCTGCCCGGAGTTTCGCAAAGGAGCCTGCCCGAAGGGGGATGCCTGTGAGTACGCACATGGTGTTTTTGAGTCATGGCTCCATCCTGCCCAATACCGAACAAGGCTTTGCAAGGATGAGACAGGCTGCTCAAGGAAAGTTTGCTTCTTTGCCCACAAACCCGAAGAGTTACGCCCAGTATATGCTTCCACTGGGTCTGCTATGCCTTCACCAAATTCCTTTTCGGCTAGTGCACAGGACTCGACTGCTATGAGTCCATTGGCTCTGAGCTCCTCATCTTTGCCAATGTCCACTGTTTCAACGCCCCCCATGTCTCCTTTGGCAGCTTCATCTCCCAAGAGCGGAAGCTTGTGGCAGAACAAACTAAACCTCACCCCACCTTCCTTGCAGCTCCCCGGTAGTCGGCTGAAGGCTACTTTAAGTGCTAGGGATCTTGATCTTGAGATGGAACTGCTTGGATTAGAGAATTCTGCTAGCCAAAAGCAGCAATTAATGGAAGAGGTGGCTCGAATCTCTTCCCCATCTTTCCGGAATACAGATTATAGCAGGATTGGTGATTTGAAGCCAACTAACCTTGATGATCTTTTGAGATCTGTTGATCCTTCTGTTCTATCTCAACTTCATGGACTTTCAGCACAATCACCTAATGGCCTTCAGATTCGCCAGAACATGAACAATCATCGTGCAAGCTATCCAACCAACCTCCCTCCCTCTTCGGCAAGAAGCCCCGCAGCATATGGGTTTGACTCATCAGCTACTGTGGCAGCTGCAGTGATGAATTCCAGATCTGCAGCCTTCGCGAAGCGAAGCCAAAGTTTTATTGATCGTGGGGCAATGACCCACCATCTCGGGCAATCTTCAGTTTCCAACCCCACCTGTAGGGTCTCATCTACCCTTTCAGATTGGAGATCCCCTGATGGGAAATTAGATTGGGCCATGAATGGAGATGAGCTGAACAAACTGAAGAAATCCGCTTCTTTCGGGTTCCGAAACAACAGAAAAACTGACATCTCCATGGCAGGGTCAGAAAATTACGAGCCAGATGTCTCGTGGGTTCATTCATTGGTTAAAGATGTTCCCTCTGAGAAGCAGCAGCAATATGATCTTAGTAGAGAGATGCTTTCTCCGTGGGTGGAGCAGATGTACAGAGAACAGGGTCAGATGGTAGCATAA 2010 0.4682 MQDFGMLSSSKSKLSSSNNVMEREFQKKKHDDLYNISLLLELSAADDLEAFKSQVEEKGFDANEASFWYGRRIGSKKMSFEKRTPLMIASLFGSTKVLKYIIDTGIVDVNRACGSDRATALHCAVAGGSESSLQIVKLLLDAQADADCLDASGNKPVSLIASASIPSSNSRRKAMELLLRGDELDGERHQIINQEVEPQKLAVPSLSSKEITEKKEYPVDISLPDINNSIYGTDEFRMYNFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGACPKGDACEYAHGVFESWLHPAQYRTRLCKDETGCSRKVCFFAHKPEELRPVYASTGSAMPSPNSFSASAQDSTAMSPLALSSSSLPMSTVSTPPMSPLAASSPKSGSLWQNKLNLTPPSLQLPGSRLKATLSARDLDLEMELLGLENSASQKQQLMEEVARISSPSFRNTDYSRIGDLKPTNLDDLLRSVDPSVLSQLHGLSAQSPNGLQIRQNMNNHRASYPTNLPPSSARSPAAYGFDSSATVAAAVMNSRSAAFAKRSQSFIDRGAMTHHLGQSSVSNPTCRVSSTLSDWRSPDGKLDWAMNGDELNKLKKSASFGFRNNRKTDISMAGSENYEPDVSWVHSLVKDVPSEKQQQYDLSREMLSPWVEQMYREQGQMVA 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1651 669 SMART ANK_2a 116 148 IPR002110 GO:0005515
Bisa05g1651 669 SMART ANK_2a 81 111 IPR002110 GO:0005515
Bisa05g1651 669 Gene3D - 6 189 IPR036770 -
Bisa05g1651 669 SMART c3hfinal6 275 301 IPR000571 GO:0046872
Bisa05g1651 669 SMART c3hfinal6 310 333 IPR000571 GO:0046872
Bisa05g1651 669 SUPERFAMILY Ankyrin repeat 32 158 IPR036770 -
Bisa05g1651 669 Pfam Ankyrin repeats (3 copies) 48 147 IPR002110 GO:0005515
Bisa05g1651 669 FunFam Zinc finger CCCH domain-containing protein 66 233 301 - -
Bisa05g1651 669 MobiDBLite consensus disorder prediction 1 21 - -
Bisa05g1651 669 ProSiteProfiles Zinc finger C3H1-type profile. 275 302 IPR000571 GO:0046872
Bisa05g1651 669 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 280 300 IPR000571 GO:0046872
Bisa05g1651 669 MobiDBLite consensus disorder prediction 365 391 - -
Bisa05g1651 669 ProSiteProfiles Ankyrin repeat region circular profile. 116 150 - -
Bisa05g1651 669 ProSiteProfiles Ankyrin repeat profile. 116 151 IPR002110 GO:0005515
Bisa05g1651 669 Gene3D - 277 338 - -
Bisa05g1651 669 PANTHER UNKEMPT FAMILY MEMBER 41 638 IPR045234 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1651 Bisa-ChrBisa05 30663827 30665836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1651 34 637 C2H2 Transcription Factor Family AT5G12850 39.628 1.33e-135 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa05g1651 Ank_2 9.2e-08 CL0465