Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1601 ATGCATTTCATTTGCTTTCATACTTCCTTCTTCACCAAGAAACGACAAAAGCACACAGTTTCCCACTTTTTCCGTTGCTCTTTGTCAAGAATCTCTCTTCTCTCTGTTCCATTTGGACCTTTCCTCTCTGCTCCCTCCACCGCCTTCCACCCCTCCTCCTCTTCTCTACTTCTTTCCTTCCTTATATTCTTTAGGGTTTATACTCAAGAATCAAACTTCATGGTTTTTCCTAGATTCTCTCCGATTCTAAAAGATATGGAAACTCTGTACCCATCTTCTTTTGTGCCAAACTCAGACTGGTTCATCCAAGAGAGCCTCAACAGCACAGAATGGACCAAAGAGGAGAACAAGAGGTTTGAAAGTGCCCTTGCCATATTTGACGAGGACACCCCAGACAGGTGGCTCAAGGTGGCAGCCATGATCCCCGGCAAGACAGTATACGATGTGATCAAGCAGTACAAGGAACTCGAGGAAGACATCGGCGAAATCGAGGCGGGTCGGGTCCCTCTTCCCGGGTACCTAGCCTCTTCCTTCACCTTTGAGCTGGTTGATCACCATACTTATGATGCATACAGAAAGAGGCCTGTGGCTTTCAAGGGTCCTGACCATGAGAGAAAGAAAGGTGTCCCTTGGACTGAAGAGGAACACAGGCGTTTTCTAATGGGACTTGTGAAGTATGGTAAGGGGGATTGGAGGAACATCTCGAGGAATTTTGTGGTGACAAAGACGCCAACACAAGTGGCGAGTCATGCTCAGAAGTACTACATAAGGCAGAAACTTTCTGGAGGGAACAACAACAAAAGGAGACCAAGCATTCATGATATAACCATAGTCAATCTCAAAGAGTCTATAACCTCAGAAGATAACAAGCCCCTTTTGTTCAATGAGTCTCCTATGTTCTCACAAAACCCAAGTGATGGGGTTTTCATCAACCCTAACTGTGACAACTTCTTCTTGTCATCTTCATCTGATATGGCTTCAAAGGCCCTTAAACAACAGGATCTTTATGACTGTGCTTTCCATGAGGCTTTTAGTTATTCTAACCTAAAAAACCAGGGTTTCAGACCAAATCCTGGAGAATTCAATAAGCCATCTGTTTTAGGCATTCATGCATTGTAA 1119 0.4441 MHFICFHTSFFTKKRQKHTVSHFFRCSLSRISLLSVPFGPFLSAPSTAFHPSSSSLLLSFLIFFRVYTQESNFMVFPRFSPILKDMETLYPSSFVPNSDWFIQESLNSTEWTKEENKRFESALAIFDEDTPDRWLKVAAMIPGKTVYDVIKQYKELEEDIGEIEAGRVPLPGYLASSFTFELVDHHTYDAYRKRPVAFKGPDHERKKGVPWTEEEHRRFLMGLVKYGKGDWRNISRNFVVTKTPTQVASHAQKYYIRQKLSGGNNNKRRPSIHDITIVNLKESITSEDNKPLLFNESPMFSQNPSDGVFINPNCDNFFLSSSSDMASKALKQQDLYDCAFHEAFSYSNLKNQGFRPNPGEFNKPSVLGIHAL 372
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1601 372 Gene3D - 209 260 - -
Bisa05g1601 372 ProSiteProfiles SANT domain profile. 211 259 IPR017884 -
Bisa05g1601 372 FunFam transcription factor MYB1R1 209 260 - -
Bisa05g1601 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 259 IPR017930 -
Bisa05g1601 372 SUPERFAMILY Homeodomain-like 109 160 IPR009057 -
Bisa05g1601 372 ProSiteProfiles SANT domain profile. 106 161 IPR017884 -
Bisa05g1601 372 ProSiteProfiles Myb-like domain profile. 203 255 IPR001005 -
Bisa05g1601 372 SMART sant 107 159 IPR001005 -
Bisa05g1601 372 SMART sant 207 257 IPR001005 -
Bisa05g1601 372 Pfam Myb-like DNA-binding domain 210 254 IPR001005 -
Bisa05g1601 372 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 103 335 IPR043363 -
Bisa05g1601 372 SUPERFAMILY Homeodomain-like 205 259 IPR009057 -
Bisa05g1601 372 NCBIfam myb-like DNA-binding domain, SHAQKYF class 206 258 IPR006447 GO:0003677
Bisa05g1601 372 CDD SANT 210 254 IPR001005 -
Bisa05g1601 372 Gene3D - 103 170 - -
Bisa05g1601 372 CDD SANT 110 156 IPR001005 -
Bisa05g1601 372 ProSiteProfiles Myb-like domain profile. 103 157 IPR001005 -
Bisa05g1601 372 FunFam Transcription factor SRM1 103 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1601 Bisa-ChrBisa05 29322346 29323942 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Bisa05g1601 Myb_DNA-binding 1.6e-10 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g1601 05 29322346 29323942 Bisa05g1601 05 29322346 29323942 CCT
Bisa05g1601 05 29322346 29323942 Bisa05g1601 05 29322346 29323942 ECH
Bisa10g0265 10 5028109 5029566 Bisa05g1601 05 29322346 29323942 ECH
Bisa05g1601 05 29322346 29323942 Bisa10g0265 10 5028109 5029566 ECH