Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1533 ATGTCGCTTTGCCTCAACTCACCAGATCTCTCCACGTGTCCAGTAATCGAGCCGTTCCTCATACTCCAACTTAAGGATAGTGGTGTCTGGGTTTGGTTGGCAAAATCGAGTGTGGGTGAGCTTTCAGTTTGGGGTTTTCTGAAGGAGGCTTGGATCCGAATGTCTTCGGGGACATCTTCTTGTTGGTGCTACAGATGCAGTCGATTCGTGAGGATACGGAGGCGGGAAGTGTTGATTTGTCCGGACTGCGGCGGTGGGTTCGTGGAAGAGCTTGAACACACGACTCGGCCTCCTCGCGTCGAATCGCGGAGGAGGAGGTTCCCTGCGGCGGCAATCTACATGATTGGCAACCACCCCCGTTTTGATCACAATCTCCTTGCTAATTTGCGGAGGGGCCGCCGGCACGGCGATGGGCTTGCCGCTTTCAATCCGGTCATCGTGCTCCGTGGATCCCCTAGCGAGTCGGGTCACGACGGCGGCAGCGGAGAAGGAGCGGACCGTGGGTTTCAGCTATACCACGACGACGGCACCGGTTCTGGGCTGAGGCCTTTGACTCCGGACAGGTCGGAGATGCTTCTGGGATCTGGATTCGACAGGCTTCTGGAACAGCTTTCCCAGATTGAAATGAACGGTATTGCGCAATACGAGCACCCTCCAGCGTCAAAGGCCGCGATCGATTCATTGCCAACAATCGAGATCCACCGGGATCATTTGGCGTCGGAATCACACTGTACAATCTGTATGGAACCTTTCCAATTGGAAACCGCTGCTCTTGAAATGCCTTGCAAGCACATGTATCATTCGGAATGCATTGTGTCATGGCTCGCGCTTCGCAATTCCTGCCCTGTTTGCCGGCGCGAAATCCCGGCAGACACACAGAGCGCTCGTGTTTCTGGGCATTCCCTTGCCTGGAACGATGACGAAAATGTGGGATTGACGATTTGGAGGCTGCCAGGCGGTGGGTTCGCCATCGGCAGATTTGCTGGGGGGAGAAGAGGTTCTTCCGATCGTGAGCTTCCTGTTGTGTACACAGAAATGGATGGTGGGTTTGGCAATGGCGGGGAGCCAAGGAGGGTGACTTGGTCGTCGAGAGAGGACAGAGGGAGAGAGAGTGGTGGTGGATTGTGCAGAATGTTTCGTAATCTGTTTGGTTGCTTTTCTTGTGGAGTTGTAGCTCAACCCTCTGCTTCTAGTTCTTATGCAGCTTCATCGGAATCTGGAGCTTTAAGGAGGATTAGATCATCTCGTTCTGGTCCGGACCTGAATAGCTCTGTGCATTCCCCATGGACCTGGTCTACGGAGGGCGACGGTGGAATGAGATCTTCGTAA 1329 0.5433 MSLCLNSPDLSTCPVIEPFLILQLKDSGVWVWLAKSSVGELSVWGFLKEAWIRMSSGTSSCWCYRCSRFVRIRRREVLICPDCGGGFVEELEHTTRPPRVESRRRRFPAAAIYMIGNHPRFDHNLLANLRRGRRHGDGLAAFNPVIVLRGSPSESGHDGGSGEGADRGFQLYHDDGTGSGLRPLTPDRSEMLLGSGFDRLLEQLSQIEMNGIAQYEHPPASKAAIDSLPTIEIHRDHLASESHCTICMEPFQLETAALEMPCKHMYHSECIVSWLALRNSCPVCRREIPADTQSARVSGHSLAWNDDENVGLTIWRLPGGGFAIGRFAGGRRGSSDRELPVVYTEMDGGFGNGGEPRRVTWSSREDRGRESGGGLCRMFRNLFGCFSCGVVAQPSASSSYAASSESGALRRIRSSRSGPDLNSSVHSPWTWSTEGDGGMRSS 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1533 442 SMART ring_2 244 284 IPR001841 -
Bisa05g1533 442 FunFam E3 ubiquitin-protein ligase RING1-like 206 291 - -
Bisa05g1533 442 Pfam zinc-ribbon 60 91 IPR039525 GO:0061630
Bisa05g1533 442 MobiDBLite consensus disorder prediction 402 442 - -
Bisa05g1533 442 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 177 289 - -
Bisa05g1533 442 Pfam Protein of unknown function (DUF1117) 310 414 IPR010543 -
Bisa05g1533 442 ProSiteProfiles Zinc finger RING-type profile. 244 285 IPR001841 -
Bisa05g1533 442 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 207 291 IPR013083 -
Bisa05g1533 442 Pfam Ring finger domain 243 285 IPR001841 -
Bisa05g1533 442 SUPERFAMILY RING/U-box 224 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1533 Bisa-ChrBisa05 28045676 28047303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1533 183 293 C3H Transcription Factor Family AT5G01980 39.640 5.27e-21 93.6