LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa05g1512	ATGAGAAAGCCTTGCTGTGAAAAAGAAGACACCAAGAAAGGAGAATGGTCCAAGCAAGAAGACCAAAAGCTCATTGATTACATCCGAACCCACGGTGAAGGCTGCTGGCGTTCCCTTCCCAAAGCTGCAGGGTTGCATCGTTGTGGGAAAAGTTGCAGGCTGAGATGGATAAACTATTTAAAACCAGGCATCAAACGTGGAAACTTTGCACAGGATGAAGAAGACCTCATCATCAAGCTCCATGCCCTCCTTGGCAACAGGTGGTCACTAATAGCGGGGAGGCTACCGGGGCGTACGGACAACGAGGTGAAGAATTACTGGAATTCTCACATCCGTAGAAAACTTACGAAGATGGGGATCGATCCAGATAACCATAAGCTCCATCATCATCATCATCCTGTTTCTGCATCTGCTGCAACATCTTCTCATCAGTCCATCAAGGAAAAACCAACATCATCATCCCACTTGAATCTTGACCTCAATATTGCTTTTCCTTCTCCCACACCACCAAACCCAAATTCTGCTGATCAGCGCCCATCCTAG	543	0.4696	MRKPCCEKEDTKKGEWSKQEDQKLIDYIRTHGEGCWRSLPKAAGLHRCGKSCRLRWINYLKPGIKRGNFAQDEEDLIIKLHALLGNRWSLIAGRLPGRTDNEVKNYWNSHIRRKLTKMGIDPDNHKLHHHHHPVSASAATSSHQSIKEKPTSSSHLNLDLNIAFPSPTPPNPNSADQRPS	180

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa05g1512	180	Pfam	Myb-like DNA-binding domain	13	60	IPR001005	-
	Bisa05g1512	180	Pfam	Myb-like DNA-binding domain	66	110	IPR001005	-
	Bisa05g1512	180	Gene3D	-	12	65	-	-
	Bisa05g1512	180	SUPERFAMILY	Homeodomain-like	11	107	IPR009057	-
	Bisa05g1512	180	CDD	SANT	68	111	IPR001005	-
	Bisa05g1512	180	ProSiteProfiles	Myb-like domain profile.	61	111	IPR001005	-
	Bisa05g1512	180	MobiDBLite	consensus disorder prediction	120	180	-	-
	Bisa05g1512	180	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	151	-	-
	Bisa05g1512	180	CDD	SANT	15	60	IPR001005	-
	Bisa05g1512	180	Gene3D	-	68	132	-	-
	Bisa05g1512	180	FunFam	MYB-related transcription factor	12	65	-	-
	Bisa05g1512	180	SMART	sant	12	62	IPR001005	-
	Bisa05g1512	180	SMART	sant	65	113	IPR001005	-
	Bisa05g1512	180	FunFam	MYB transcription factor	67	128	-	-
	Bisa05g1512	180	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	8	60	IPR017930	-
	Bisa05g1512	180	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	61	115	IPR017930	-
	Bisa05g1512	180	ProSiteProfiles	Myb-like domain profile.	8	60	IPR001005	-
	Bisa05g1512	180	MobiDBLite	consensus disorder prediction	135	161	-	-
	Bisa05g1512	180	MobiDBLite	consensus disorder prediction	165	180	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa05g1512	Bisa-ChrBisa05	27498966	27499811	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa05g1512	2	163	MYB Transcription Factor Family	AT4G38620	61.728	8.79e-75	224

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bisa05g1512		Myb_DNA-binding	2.9e-14	CL0123