Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1482 ATGAAGACTTCAAATTTGAAGTTTGGCCATGTTGAAGGAGTCAGTTTGGGGTACCTGCAAAAACTAAGAGATTCTGCAACCCATTCAATAGAAGATTGCATGATGCGCTTGATCCAAAATGCCAACAGGAAGTTTACTTTAGGCTATGTAACAACAACAGGGATAAAGCGATTGAATGAGGTGGAATCCGATGAAAAAAGTGAGACATCCTCCATGCTCAACCGGAAGGCCCTTGAGTCTTGTTTGGGGAAATTGCTGACTCTGGTGTCATTGTTGGGTGGTTTAGAGACCATATCGTACAACATCATCCCTTCGGGATTTCAGTTCCTCCTTCAACCTGAACCTCTGTTGCTGAGAAGGTGGTTTTTTATTTTTTGCTTGGTGACTGTGGGAATCTGGCCTTCCTTCTCTGCAGCTTCAATGGCGGCTGAACAACTCAATAAACCTCCTTCCCGTCCTCCTTACCCTCAGATGATTCTGAGAGCAATCGAAGAACTGAACGAGGAGAATGGCTCCAACAAATCGTCGATATCGAAGTACATAGAATCCACATATGGCCATCTGCCTCCGGGTCACTCGGCTCTTCTCTCTCACCACCTCAACTCTATGAGACAGAGTGGCCAGCTCGTGTTTTGTAAAAACAACTACTCCAAGTACGACCCTAATGCCCCACCTCGGAGGGGACGTGGCAGGCCGCCCAAGCCCAAGCCCGACCCCACGGGCCCCCTCCCTCCTCGCTCAGCTTCCGGTCCTCCCAGGCCCAGGGGTAGGCCCCCAAAAGACCCCAATGCCCCACCCAAGATGAAGGTGTCCGCCGGGAGTGGCAGACCAAGGGGCCGGCCGAGGAAAAAAGCCCGGTCGGCCGGTGGGTTGGTTGCTGCGGCGGAGGAGACGGCCTCTGGGAGGCCCAGAGGTAGGCCTCCGAAGGCCAAGGGCCCATTCACAGAGGTGATTGTATCTGAATCCTCTTCGAACTGGTGTGGCGTCCCTGCTTCAGGCCTTCAGCTAATTTTGGCTCTCTTTCTTCCATTCTTACTGCGTTTGTTACGTCTGTTGTCTGTGGTGGTTCTCTCGTCGACGGTGTCGGCGCTCCTCAGTCCAGAAGGGGGTGGAATAAAGGCTACCAGAAGGTGGGTGATCTGCAAAATGAATCCAGATATGAATGGGAGTGATTTAGAGGTTGTGGAAGCTGAGGATGAAGTGAATCTTGAAGAGATACATAGAATGAGACAGAGCTCGGAACGAAAGGATGACAAGAATAAAAAAACCAGGAAAATGATTTTTAAACCAGAAATGGAGCATGGAGATTTTCATCCTGACCACACAACAGAAGAGGGCAGAGAGAGGAAGGATAAAACGAGTGAATCAGAAATGGTGACTGGAATATGGAGAGAGGATGTGAATCAAGAATGTATGATCGTTACAGACCCAGGAACCATACTAAATGAATCCTCTTTAACCCATGAGCAGGCGAAGGTGTTAAAGTCTATGGTAGACTCCCTAACAGAATGGCATATTTTGCCATATAAACAAAAGGAGATACATGAAAGCAGATTAGTAAAGGAGGGCCACATGGAAAATGAAAATGTAATAATCGCAGTTTGA 1605 0.4866 MKTSNLKFGHVEGVSLGYLQKLRDSATHSIEDCMMRLIQNANRKFTLGYVTTTGIKRLNEVESDEKSETSSMLNRKALESCLGKLLTLVSLLGGLETISYNIIPSGFQFLLQPEPLLLRRWFFIFCLVTVGIWPSFSAASMAAEQLNKPPSRPPYPQMILRAIEELNEENGSNKSSISKYIESTYGHLPPGHSALLSHHLNSMRQSGQLVFCKNNYSKYDPNAPPRRGRGRPPKPKPDPTGPLPPRSASGPPRPRGRPPKDPNAPPKMKVSAGSGRPRGRPRKKARSAGGLVAAAEETASGRPRGRPPKAKGPFTEVIVSESSSNWCGVPASGLQLILALFLPFLLRLLRLLSVVVLSSTVSALLSPEGGGIKATRRWVICKMNPDMNGSDLEVVEAEDEVNLEEIHRMRQSSERKDDKNKKTRKMIFKPEMEHGDFHPDHTTEEGRERKDKTSESEMVTGIWREDVNQECMIVTDPGTILNESSLTHEQAKVLKSMVDSLTEWHILPYKQKEIHESRLVKEGHMENENVIIAV 534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1482 534 PRINTS High mobility group protein (HMGY) signature 290 309 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Bisa05g1482 534 PRINTS High mobility group protein (HMGY) signature 250 262 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Bisa05g1482 534 PRINTS High mobility group protein (HMGY) signature 277 288 IPR000116 GO:0000785|GO:0003677|GO:0005634|GO:0006355
Bisa05g1482 534 FunFam HMG-Y-related protein A 147 229 - -
Bisa05g1482 534 MobiDBLite consensus disorder prediction 215 311 - -
Bisa05g1482 534 Gene3D - 147 224 IPR036388 -
Bisa05g1482 534 MobiDBLite consensus disorder prediction 235 265 - -
Bisa05g1482 534 SUPERFAMILY "Winged helix" DNA-binding domain 148 227 IPR036390 -
Bisa05g1482 534 PANTHER HISTONE H1 143 311 - -
Bisa05g1482 534 MobiDBLite consensus disorder prediction 409 457 - -
Bisa05g1482 534 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 151 221 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa05g1482 534 SMART h15plus2 149 215 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa05g1482 534 Pfam linker histone H1 and H5 family 153 213 IPR005818 GO:0000786|GO:0003677|GO:0006334
Bisa05g1482 534 PRINTS AT-hook-like domain signature 226 236 IPR017956 GO:0003677
Bisa05g1482 534 PRINTS AT-hook-like domain signature 250 261 IPR017956 GO:0003677
Bisa05g1482 534 PRINTS AT-hook-like domain signature 273 283 IPR017956 GO:0003677
Bisa05g1482 534 SMART AT_hook_2 226 238 IPR017956 GO:0003677
Bisa05g1482 534 SMART AT_hook_2 275 287 IPR017956 GO:0003677
Bisa05g1482 534 SMART AT_hook_2 252 264 IPR017956 GO:0003677
Bisa05g1482 534 SMART AT_hook_2 301 313 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1482 Bisa-ChrBisa05 26728068 26739763 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1482 147 230 Single Myb Histone (SMH) Gene Family AT1G49950 39.560 2.00e-07 50.8
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g1482 05 26728068 26739763 Bisa05g1482 05 26728068 26739763 CCT
Bisa05g1482 05 26728068 26739763 Bisa05g1482 05 26728068 26739763 ECH