Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1480 ATGGCTACTTCTCTGGATATGTCACTTGACGACAGGATAAAGCACAGAAGTAACAGGGAGAGAGGTAGAGGGCGTGGCAGAGGCCCCCGTGGCCGTGGAACAGGTCGGAATCTTGGTGGTGGAAGAATGTCTGGTGCAGCCCGTAGGGTTCCTCCTACAATTAATCCTCGGCCATCATCTTATGCCATTGCCAAGTCTATTCGCAGAACCAGGCGATTTCCATGGCAGCATGATTTATTTGAAGATAGCCTAAAAGCTGCAGGGATACAAGGAGTAGAAGTTGGCACAAAGTTGTATGTTTCCAACTTGGACCATGGAGTAACCAATGAAGATATAAGGGAACTTTTCTCTGAAATTGGGGACTTGAAGCGCTATGCAGTTCACTATGACCGAAATGGACACCCTAGTGGTTCTGCTGAAGTTGTCTATACAAGAAGAAGTGATGCATTTGCAGCTCTCAAGCGATACAATAATGTGCTTTTGGATGGAAAGCCCATGAAGATTGAGATAGTTGGTGCTAATGCATATTTACCTGTATCAGCTCGTGTGAATGTGTCTGGGGTAAATGGGCAGAGGAAGAGGACAGTTGTTATGACGCCTGGAGGAGGTCGAACTGGAGGCCCAGCTATGTTTAATAATGGTGTTGGCCCTGCTGGTTGGGGACGTCGCGGTGGGGGAAGGAGTGGCAGTGGTATTATGCGTGGTCGAGGCCGTGGACGTGCTAGGGGTCGTGGCCAGGGTCGTGGCCAAGGTCGTGGGAAAAGGGAAGCTATTGACAAGTCAGCGGAGGAACTTGACAAAGAATTGGATACCTATCATGCCGAGGCCATGCACATTTCATGA 843 0.4923 MATSLDMSLDDRIKHRSNRERGRGRGRGPRGRGTGRNLGGGRMSGAARRVPPTINPRPSSYAIAKSIRRTRRFPWQHDLFEDSLKAAGIQGVEVGTKLYVSNLDHGVTNEDIRELFSEIGDLKRYAVHYDRNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEIVGANAYLPVSARVNVSGVNGQRKRTVVMTPGGGRTGGPAMFNNGVGPAGWGRRGGGRSGSGIMRGRGRGRARGRGQGRGQGRGKREAIDKSAEELDKELDTYHAEAMHIS 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1480 280 CDD RRM_THOC4 96 170 - -
Bisa05g1480 280 Gene3D - 91 172 IPR012677 -
Bisa05g1480 280 MobiDBLite consensus disorder prediction 1 58 - -
Bisa05g1480 280 MobiDBLite consensus disorder prediction 195 260 - -
Bisa05g1480 280 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 96 173 IPR000504 GO:0003723
Bisa05g1480 280 SMART rrm1_1 97 169 IPR000504 GO:0003723
Bisa05g1480 280 SMART FoP_duplication_2 206 280 IPR025715 -
Bisa05g1480 280 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 98 166 IPR000504 GO:0003723
Bisa05g1480 280 Coils Coil 255 275 - -
Bisa05g1480 280 Pfam C-terminal duplication domain of Friend of PRMT1 222 274 IPR025715 -
Bisa05g1480 280 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 278 - -
Bisa05g1480 280 SUPERFAMILY RNA-binding domain, RBD 26 170 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1480 Bisa-ChrBisa05 26573563 26576918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1480 95 170 Eukaryotic Initiation Factors Gene Family AT2G23350 38.158 1.36e-09 56.6