LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa05g1474	ATGGGAAGACAGCCCTGCTGCGACAAAGTCGGGTTGAAGAAGGGCCCGTGGACTGCAGAGGAAGACAAGAAGCTCATCAACTTCATCCTCACCAATGGTCAATGTTGCTGGAGAGCTGTTCCTAAGCTCGCAGGGCTACTGAGGTGTGGAAAGAGTTGCAGGCTGAGATGGACCAACTATCTAAGGCCAGACCTGAAGAGAGGGCTTCTTTCAGAATATGAAGAGAAAATGGTGATTGATCTCCATGCTCAACTTGGCAACAGATGGTCCAAGATTGCTTCTCATCTTCCTGGAAGAACTGATAATGAGATCAAGAACCACTGGAACACCCACATCAAGAAGAAGCTCAAGAAAATGGGCATTGATCCTGTCACCCACAAGGCTCTTTCTTCTGAGCAAACCCATCCCCCACAAGAACAGCAGCAACCTTGGACTCCTAACCTCAAAACTGAACCTGAAATTGATCAAAATGGGGAGCCAGAGAAGCCAGAGACCTCGTACGAGTCATCAACCTTAAGTGAATGGAAAGAGGAGGTCAAAACTGAGACTCCCCCAGAACTGGACACGGCGGTGGAGATCATGAATGGTTTCTGCACAGATGAGGTCCCACTAATAGAGCCACATGAGATTCTAGTGTCCTCTTCTTCATCTTCTTCATCGTCGTCATCATCATCATCATCCAACTTCCTTGAATACCTTCAGCTCCCAGATTTTGAGTGGTCTTGTAATTACAGTGACAACAACAATAGCAGCAGCAGCAGCAGCAGCCGCAGTATGGGGTTGTGGGATGATGAGTTTATCAGAAGCTGGGATTTGCTTATAAATGATGATGATGATGGTGATAGAAAGATAGAGTTTGATTCTGGTCTTTACCAGTGTCCCAGAATGCTGATGGATCAAGAATCTTGGGCATATGGGTTGTTTTAA	927	0.4639	MGRQPCCDKVGLKKGPWTAEEDKKLINFILTNGQCCWRAVPKLAGLLRCGKSCRLRWTNYLRPDLKRGLLSEYEEKMVIDLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLKKMGIDPVTHKALSSEQTHPPQEQQQPWTPNLKTEPEIDQNGEPEKPETSYESSTLSEWKEEVKTETPPELDTAVEIMNGFCTDEVPLIEPHEILVSSSSSSSSSSSSSSSNFLEYLQLPDFEWSCNYSDNNNSSSSSSSRSMGLWDDEFIRSWDLLINDDDDGDRKIEFDSGLYQCPRMLMDQESWAYGLF	308

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa05g1474	308	FunFam	MYB transcription factor	11	67	-	-
	Bisa05g1474	308	FunFam	Myb transcription factor	71	133	-	-
	Bisa05g1474	308	SMART	sant	66	114	IPR001005	-
	Bisa05g1474	308	SMART	sant	13	63	IPR001005	-
	Bisa05g1474	308	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Bisa05g1474	308	Gene3D	-	11	67	-	-
	Bisa05g1474	308	CDD	SANT	16	61	IPR001005	-
	Bisa05g1474	308	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Bisa05g1474	308	Gene3D	-	70	145	-	-
	Bisa05g1474	308	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Bisa05g1474	308	PANTHER	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	1	249	-	-
	Bisa05g1474	308	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Bisa05g1474	308	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Bisa05g1474	308	Pfam	Myb-like DNA-binding domain	71	111	IPR001005	-
	Bisa05g1474	308	MobiDBLite	consensus disorder prediction	128	187	-	-
	Bisa05g1474	308	CDD	SANT	74	112	IPR001005	-
	Bisa05g1474	308	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Bisa05g1474	308	MobiDBLite	consensus disorder prediction	171	185	-	-
	Bisa05g1474	308	MobiDBLite	consensus disorder prediction	128	152	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa05g1474	Bisa-ChrBisa05	26476236	26477478	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa05g1474	1	308	MYB Transcription Factor Family	AT5G16600	50.000	7.23e-106	310

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bisa05g1474		Myb_DNA-binding	8.7e-13	CL0123