Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1449 ATGACAAGAAGGAAGGTGAAGTTGGCATTCATAGCCAACGACTCTGTGAGGAAAGCCACATTCAAGAAAAGGAAGAAGGGGATGATGAAGAAGGCACATGAATTAACTACCCTTTGTGGGGTCGATGCATGTGTCATAGTTTACAGTCACTGCGATCCTCAGCCTGAGGTGTGGCCTTCTCCCATGGGAGTCCAACGTGTGCTCAAGAGGTTCAAGTCCATGCCTGAGTTGGAGCAGTGCAAAAAGATGGTGAATCATGAGGGCTATATGAGGCAGAGGATTATGAAGGCCAACGAACAAGTGAAGAAGATGAAGAAGGAGAATAGGGAGAAGGAGATGACCCAAATGATGTTTCAGTATGTGGGCGCAGGGCAGGTTTTGCACAATATGAGTGTGGGTGATCTTAATGATTTGGCATGGCTGATGGACCAAAACCTGAGGGATATCAATAGGAGATTGGAGGTGATGAACAAGATGACTCAGAACGAAAGCCAATCAGAAGTTGCAGAGAGGGGGAAGGGAGTGATGCATATGAACATGGCCAACGTGCAGGAGCAAGAGATGTTTGTGAGGATGATGAACAGTGGTGGGGATGACATTGTTCCATTTGGAGATGTCAATCACCAGAATGCTTTCTGGCCTAATCCCTTTTTCCCTTGA 660 0.4667 MTRRKVKLAFIANDSVRKATFKKRKKGMMKKAHELTTLCGVDACVIVYSHCDPQPEVWPSPMGVQRVLKRFKSMPELEQCKKMVNHEGYMRQRIMKANEQVKKMKKENREKEMTQMMFQYVGAGQVLHNMSVGDLNDLAWLMDQNLRDINRRLEVMNKMTQNESQSEVAERGKGVMHMNMANVQEQEMFVRMMNSGGDDIVPFGDVNHQNAFWPNPFFP 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1449 219 PANTHER MADS BOX PROTEIN 3 153 - -
Bisa05g1449 219 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa05g1449 219 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Bisa05g1449 219 ProSiteProfiles MADS-box domain profile. 1 49 IPR002100 GO:0003677|GO:0046983
Bisa05g1449 219 SUPERFAMILY SRF-like 2 95 IPR036879 GO:0003677|GO:0046983
Bisa05g1449 219 Coils Coil 94 114 - -
Bisa05g1449 219 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Bisa05g1449 219 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa05g1449 219 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa05g1449 219 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa05g1449 219 FunFam agamous-like MADS-box protein AGL80 13 97 - -
Bisa05g1449 219 Gene3D - 13 96 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1449 Bisa-ChrBisa05 25969825 25970484 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1449 1 169 Type I MADS-box Gene Family AT5G48670 54.118 2.68e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa05g1449 SRF-TF 1.3e-18 No_clan