Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa05g1417 | ATGCTGCTTTCTAGTGACTTGTCCTCTTTTGCTGTCATATGTTACTTTGATGGTGCTAAGTATACTATAAAGTCCCAAAAGCAAAATCAAAATGGAAAGGAGTGCCATTCATTTTCTCTGATTTATGCAAACGGTGAACGCTCACTTGATCTGATATGCAAGGACAAAGCACAGGCAACTTCTTGGTTTGTGGGCTTGAGAGCTGTAATATCTCAGTCCCAGCATCCAAGAGCTTTTAGTAGTTTAAGAAGCTGCAAAGGTGTGCAAAGTTGCGTCAGTAGTCCAGCCGGAATCTTACGAAGAAAGAAAAACCTTGGCCTTCTGGAGGAGGCAGCTGAATTTACTAAGGTACACAGTGTATGTGCTAGTCCTGCTTTGTCACTTTCAGAAAGGTGCTTTTCTGATGGCTTAGCATATACTTGCGATAGCTTCTATTCCTCGGAGTCTTTCCTGTCCAATACTCAAAGGTCTTTTGATAATTCAGTCCCAAACTCCCCATATATTCATCCAGATATTCTTAACAAGAGTGGTTCCACAAATGTTGACTTGGAGTATCAGAAGAATTTGCCCTATAGGTATCTGCTGCCTGCTAGCTCCCCGCGCATAGGAAAAAGCAATGTATTGAAAGATATCATGATCTGGGGTGAAGGGAATTTAGGAATTGTAGGCAGTGGGAATGATCGGTTCGTCAACCAACCAGGAGTTCATGTGGCATTGCCAAAGTTACTAGAATCTACCATGATGTTAGATGTACAAAACATAGCTTTAGGAGGAAAGCATGCTGCCTTAGTTACAAAACAAGGGGAAGTGTTATGCTGGGGTCAGGGGAAGGGGGGGAGGCTTGGTCACAAAATCGATATTGATATAAGCTCCCCGAAAATTGTTGATTCTCTTAATGGGATCCACATAAAATATGCTGCCTGTGGTGAGTACCATACATGTGCTTTAACAGATTCTGGTGAAGTATATGCATGGGGGGATGATGGTAGAGGTAAATTTATCAGTCAGTGGATACCGCATAAACTCTCTGGTCCTTTAGACGGTATTAGTATATCAAGTGTTGCTTGTGGGGACTGGCACACTGCAATGGTCTCTAGCTGCGGCCGGCTGTTTACTTATGGAGATGGTACATTTGGAGTTCTCGGTCATGGGGATTCTTTGAGCATTTCTCAACCAAAAGAAGTGGAATCTCTTAAGGGTCTACGGGTGAGGTCTGTTGCTTGTGGATCATGGCACACAGCGGTGATTGTTGAAGTCATGGTTGACCGTTTTAGGTATAATACCGGTAAGCTGTTTACTTGGGGTGATGGAGATGAAGGCATGCTTGGTCATGCTGATAATGGAAGGAAGCTTGTGCCAACTTGTGTAGCACAACTTTTGGATTATGATTTTGTTAAAGTATCTTGTGGAAGAATGTTGACTGTAGCATTGACTAATATGGGAAAAGTCTTCACAATGGGAAGTGCAGTGCACGGACAGCTAGGAAACTCACATGCCAGGGATAAATCGGTGACAATTGTTGAAGGACTGCTTAAACAGGAGTTTGTCAAAGAGATATCATCAGGTTCATATCATGTTGCTGTCTTGACATCTGCTGGGAGTGTCTATACATGGGGCAAGGGTGCAAACGGACAGCTCGGGTTAGGTGACACCGAAGACAGATGCTTGCCATCTTTTGTGGAGGCTCTAAGAGACAGGCAGGTAGAAAGTATCATGTGTGGGCCGAGCATCACGGCTGCAATATGTTTACACAGACCTATTTCTATCAGTGACCAGTCAGCTTGTAGTGGTTGTAAGTTGCCTTTTGGGTTTACAAGGAAGAAGCATAACTGCTATAACTGTGGCCTCCTATTTTGCCATTCATGTAGTAGTAAAAAAGTTACAAACGCATCTCTGGCGCCAAATAAGAGCAAGGCTTTTCGAGTTTGTGATCAATGCCTCGATAAACTGGTATCAAAGTCTAGAAATTACAACACTCAGCAGCTACTGAAGAATCAGAATAGGTTTCCTGATCCTGCAGAAGATAGAGGTGAAACAACTGTGACACAGGGTCCACTGTTGTCTCTTGGTCAATCATGTTACAAAAGAAGCATGCCAGGTGGAAGAAAGGACTTGAAAGACCAACAAGAAAGCCAGCAGAGTGTAGAAAATATTTCTTGTGTGTTGGGTGGAATGCCACAATGGGGGCAAGTTCCATGCCCTGCCTTATTTAAAAAATGTACAGACCATTCTGTTTCATCATCCAAAAATAAATTATCTATTCATACTCCGACGATTTTGGAATCTAGATTATCCGACATTCCTGACACAGAGAAACATGTGACAAAGTCTGACAGAATGCTCATAGAAGAAGTTCAGAGGCTGAGAACCAAAGCTAGAAGCCTTGAGGAGCAATGTGAGATTAGAAACCATGAGATACAAGAATGTCAAAAGAAAATCGAGGAGAGTTGGCGCCAAGCAAGGGAGGAGGCGGCAAAGAGTAAGGCAGCAAAAGAGGTCATAAAAGCATTGGTATTAAGACTACATAAGATATCGGGAAAAACCAATGCTGGACAAGAAGGAAAGGTTGGGGTAGAGGAATGTCTGTTGAATTTAACACCGATACATACCGTGCATACCCCAAAAGATGGCATTGCGGAGAGCCTATCTAGTTCCCCTACAGTATTCTCTGACACATTAAAGTCCAAATTTGCAAGTGTGTTCCTCAAAAGTGATAGATCAAAGGAGGATTCTGAGTTAACAAGGGCAGAGTCTGAACAAGGCAGCAGTGAAGTCTTGAATGTTGAATGGGTTGAACAGTATGAGCCTGGTGTTTACATCACCTTTACTGCCTTGCCAAGTGGGCAGAAGGGTCTCAAGAGAGTGAGATTTAGCCGGAAGCAATTTTCCGAGAAGGAAGCGGAGCGATGGTGGGAGGAGAATCAAGGCACAGTGTACCATAAGTATGGGATTGAGGGATATATAAACACAAGCCAAAGCTGGGAGAAGGGCTAA | 2994 | 0.4325 | MLLSSDLSSFAVICYFDGAKYTIKSQKQNQNGKECHSFSLIYANGERSLDLICKDKAQATSWFVGLRAVISQSQHPRAFSSLRSCKGVQSCVSSPAGILRRKKNLGLLEEAAEFTKVHSVCASPALSLSERCFSDGLAYTCDSFYSSESFLSNTQRSFDNSVPNSPYIHPDILNKSGSTNVDLEYQKNLPYRYLLPASSPRIGKSNVLKDIMIWGEGNLGIVGSGNDRFVNQPGVHVALPKLLESTMMLDVQNIALGGKHAALVTKQGEVLCWGQGKGGRLGHKIDIDISSPKIVDSLNGIHIKYAACGEYHTCALTDSGEVYAWGDDGRGKFISQWIPHKLSGPLDGISISSVACGDWHTAMVSSCGRLFTYGDGTFGVLGHGDSLSISQPKEVESLKGLRVRSVACGSWHTAVIVEVMVDRFRYNTGKLFTWGDGDEGMLGHADNGRKLVPTCVAQLLDYDFVKVSCGRMLTVALTNMGKVFTMGSAVHGQLGNSHARDKSVTIVEGLLKQEFVKEISSGSYHVAVLTSAGSVYTWGKGANGQLGLGDTEDRCLPSFVEALRDRQVESIMCGPSITAAICLHRPISISDQSACSGCKLPFGFTRKKHNCYNCGLLFCHSCSSKKVTNASLAPNKSKAFRVCDQCLDKLVSKSRNYNTQQLLKNQNRFPDPAEDRGETTVTQGPLLSLGQSCYKRSMPGGRKDLKDQQESQQSVENISCVLGGMPQWGQVPCPALFKKCTDHSVSSSKNKLSIHTPTILESRLSDIPDTEKHVTKSDRMLIEEVQRLRTKARSLEEQCEIRNHEIQECQKKIEESWRQAREEAAKSKAAKEVIKALVLRLHKISGKTNAGQEGKVGVEECLLNLTPIHTVHTPKDGIAESLSSSPTVFSDTLKSKFASVFLKSDRSKEDSELTRAESEQGSSEVLNVEWVEQYEPGVYITFTALPSGQKGLKRVRFSRKQFSEKEAERWWEENQGTVYHKYGIEGYINTSQSWEKG | 997 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa05g1417 | 997 | SUPERFAMILY | RCC1/BLIP-II | 210 | 585 | IPR009091 | - | |
| Bisa05g1417 | 997 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 307 | 331 | - | - | |
| Bisa05g1417 | 997 | SUPERFAMILY | FYVE/PHD zinc finger | 588 | 658 | IPR011011 | - | |
| Bisa05g1417 | 997 | SUPERFAMILY | PH domain-like | 27 | 70 | - | - | |
| Bisa05g1417 | 997 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 406 | 416 | IPR000408 | - | |
| Bisa05g1417 | 997 | Pfam | FYVE zinc finger | 591 | 650 | IPR000306 | GO:0046872 | |
| Bisa05g1417 | 997 | ProSiteProfiles | PH domain profile. | 1 | 71 | IPR001849 | - | |
| Bisa05g1417 | 997 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 481 | 532 | IPR000408 | - | |
| Bisa05g1417 | 997 | ProSitePatterns | Regulator of chromosome condensation (RCC1) signature 2. | 354 | 364 | IPR000408 | - | |
| Bisa05g1417 | 997 | ProSiteProfiles | BRX domain profile. | 928 | 983 | IPR013591 | - | |
| Bisa05g1417 | 997 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 268 | 319 | IPR000408 | - | |
| Bisa05g1417 | 997 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 533 | 584 | IPR000408 | - | |
| Bisa05g1417 | 997 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 320 | 367 | IPR000408 | - | |
| Bisa05g1417 | 997 | SMART | fyve_4 | 583 | 652 | IPR000306 | GO:0046872 | |
| Bisa05g1417 | 997 | PRINTS | Chromosome condensation regulator RCC1 signature | 354 | 370 | IPR000408 | - | |
| Bisa05g1417 | 997 | PRINTS | Chromosome condensation regulator RCC1 signature | 528 | 549 | IPR000408 | - | |
| Bisa05g1417 | 997 | PRINTS | Chromosome condensation regulator RCC1 signature | 370 | 384 | IPR000408 | - | |
| Bisa05g1417 | 997 | PRINTS | Chromosome condensation regulator RCC1 signature | 210 | 226 | IPR000408 | - | |
| Bisa05g1417 | 997 | PRINTS | Chromosome condensation regulator RCC1 signature | 470 | 488 | IPR000408 | - | |
| Bisa05g1417 | 997 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 209 | 267 | IPR000408 | - | |
| Bisa05g1417 | 997 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 429 | 480 | IPR000408 | - | |
| Bisa05g1417 | 997 | Gene3D | - | 17 | 77 | IPR011993 | - | |
| Bisa05g1417 | 997 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 589 | 661 | IPR013083 | - | |
| Bisa05g1417 | 997 | ProSiteProfiles | Zinc finger FYVE/FYVE-related type profile. | 589 | 651 | IPR017455 | - | |
| Bisa05g1417 | 997 | ProSiteProfiles | Regulator of chromosome condensation (RCC1) repeat profile. | 368 | 419 | IPR000408 | - | |
| Bisa05g1417 | 997 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 533 | 581 | IPR000408 | - | |
| Bisa05g1417 | 997 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 368 | 416 | IPR000408 | - | |
| Bisa05g1417 | 997 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 429 | 477 | IPR000408 | - | |
| Bisa05g1417 | 997 | Pfam | Regulator of chromosome condensation (RCC1) repeat | 481 | 529 | IPR000408 | - | |
| Bisa05g1417 | 997 | Coils | Coil | 778 | 812 | - | - | |
| Bisa05g1417 | 997 | Gene3D | - | 332 | 421 | IPR009091 | - | |
| Bisa05g1417 | 997 | Gene3D | - | 203 | 331 | IPR009091 | - | |
| Bisa05g1417 | 997 | Gene3D | - | 422 | 588 | IPR009091 | - | |
| Bisa05g1417 | 997 | PANTHER | REGULATOR OF CHROMOSOME CONDENSATION | 26 | 842 | - | - | |
| Bisa05g1417 | 997 | Pfam | Transcription factor regulating root and shoot growth via Pin3 | 929 | 982 | IPR013591 | - | |
| Bisa05g1417 | 997 | CDD | FYVE_like_SF | 594 | 646 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Bisa05g1417 | Bisa-ChrBisa05 | 25037531 | 25042330 | Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa05g1417 | 893 | 987 | Major Intrinsic Protein MIP | AT1G31880 | 39.394 | 5.50e-13 | 69.7 |