Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1388 ATGAAGCTTTCAACATCAGGGTTGGGTCAGCAGGGACATGAAGGGGAGAAGAAGTGTTTGAATTCTGAGCTATGGCATGCATGCGCGGGACCCCTTGTTTCCCTACCAACTGCGGGAACTCGTGTGGTTTACTTCCCTCAGGGTCATAGCGAGCAGGTTGCTGCCACAACTAACAGGGAAGTTGATGGGCACATACCTAACTACCCAAGCTTGCCACCCCAGTTGATTTGCCAACTTCATAATGTCACAATGCATGCAGATGTTGAGACAGATGAAGTGTACGCTCAAATGACCCTGCAGCCATTGACTCCACAAGAGCAGAAGGAAACAATTCTTCCTATGGAATTGGGCATACCAAGTAAGCAGCCCACAAATTATTTTTGCAAGACATTAACAGCTAGTGACACCAGCACACATGGAGGATTCTCTGTTCCTCGTCGTGCAGCCGAGAAAGTTTTCCCCCCTCTGGATTTCTCACAGCAACCACCAGCACAAGAACTAATTGCCAGGGATCTCCACGATGTTGAGTGGAAGTTTCGACATATTTTTCGGGGACAGCCAAAACGGCACCTTCTTACAACAGGATGGAGTGTATTTGTTAGTGCTAAGAGACTTGTTGCTGGAGATTCTGTCCTTTTCATATGGAATGAAAAGAATCAGCTTCTTTTGGGAATACGTCGCTCCAGTCGACCACAAACTGTGATGCCCTCGTCAGTTCTTTCAAGTGATAGTATGCACATTGGATTGCTTGCAGCTGCTGCTCATGCAGCTGCAACTAATAGCTGTTTTACTGTCTTCTATAATCCAAGGGCTAGTCCTTCTGAGTTCGTTATACCACTTTCGAAGTATATCAAAGCTGTGTATCATACACGTGTTTCAGTTGGTATGCGTTTCAGGATGCTATTTGAGACTGAAGAGTCAAGTGTTCGCCGGTACATGGGTACGATAACTGGTATAAGTGATCTGGATCCTGTTCGTTGGCCGAGCTCTCATTGGCGGTCTGTCAAGGTTGGTTGGGATGAATCAACAGCTGGAGAAAGACAGCCAAGGGTATCACTGTGGGAAATTGAGCCTTTAACGACATTCCCAATGTATCCATCACTATTTCCCCTCAGATTGAAACGTCCATGGTATCCTGGCCCCTCATTTATGCATGATGGCAGAGATGAAGCAGCTAGTGGGCTAATGTGGCTGAGAGGTGGACCTGGTGACCAAGGTCTCAACACTTTAAACTTTCAAAGTGGTGGTTTGTTGCCATGGATGCAGCAGAGACTGGATCCGGCTTTGCTGGGAAATGATCATAATCAGCAGTACCAAGCCCTGTTGGCAGCTGGTTTGCCGAACGTGGGGAGTGGAGATCTCCTGAGGCAACAAATGATGCATTTTCAACAGCCTTTCTCTTTACTTCAACAATCAGGAAACCATAATCCTTCTTTGCAACTTCAGCAGCAAACGATTCAACAATCGATGCCTTCTAATATTATGCAGCAGCCACAAGCCCCATTATTGTCGGACAACTTGTCACAAAACCTCCTTCAGAAACAACATAACAATCAGGACGACCAAGCACAGCAGCAGAATAGTACCTACCACGACCCACTCTTGATCCAAAGCGATCAGCTCTCGAGGCAACACGCAAATGTGCCTTCACCATCATATTCGAAACCAGATTGCTTAGATTTAAAGTTCTCTTCATCAGTTTCCCCTGTGCAAAACATGCTTGGTTCCCTTTGTCCGGAAGGGAGTGGTGGTAATCTTTTGAACCTATCTAGAACTGGTCAGTCCATCATGACTGAACAGCTGCCCCAACAATCATGGACTCCAAAGTATCCACCTGTGCAGGTCAACGCCTTTGGCAACTTGATGTCACATGTACAATATACCGGAAAAGATTCTGCATCGGCTCCACCACATTGTACTACAGATGCCCAAAATCCCACTCTCTTTGGTGTTAATATCGATTCATCTGTTCTTCTGCTCCCCACCACTGTTCCTGGTTATACATCTTCCTCAGTTGATACTGATACATCAACTGTGCAAATAGGAGATTCTGGATTTCAGGGCTCTCTGTATGGTTGCATGCAAGATTCATCAGAGTTATTGCAAAATTCTGGGCAAGTTGATTCAAAGAACCCAACTCCAATATTTGTCAAGGTTTACAAATCAGGGTCGGTTGGGCGCTCACTTGACATCTCCCGGTTCAGCAGCTATCATGAACTGCGAGAGGAGTTGGCTCAGATGTTCGGAATTGAGGGGAAGTTAGAAGACCCTCTTAGATCAGGCTGGCAGCTTGTATTCGTCGACAGGGAGAATGACATTCTTCTCCTTGGCGACGATCCGTGGGAATCATTTGTCAACAATGTTTGGTACATCAAAATACTGTCTCCCGAAGATATTCAGAAGATGGGAGAGCAAGTGGTTGAATCTCTCGGTCCAAACGCCGGATAG 2448 0.4616 MKLSTSGLGQQGHEGEKKCLNSELWHACAGPLVSLPTAGTRVVYFPQGHSEQVAATTNREVDGHIPNYPSLPPQLICQLHNVTMHADVETDEVYAQMTLQPLTPQEQKETILPMELGIPSKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDFSQQPPAQELIARDLHDVEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRSSRPQTVMPSSVLSSDSMHIGLLAAAAHAAATNSCFTVFYNPRASPSEFVIPLSKYIKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPSSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSLFPLRLKRPWYPGPSFMHDGRDEAASGLMWLRGGPGDQGLNTLNFQSGGLLPWMQQRLDPALLGNDHNQQYQALLAAGLPNVGSGDLLRQQMMHFQQPFSLLQQSGNHNPSLQLQQQTIQQSMPSNIMQQPQAPLLSDNLSQNLLQKQHNNQDDQAQQQNSTYHDPLLIQSDQLSRQHANVPSPSYSKPDCLDLKFSSSVSPVQNMLGSLCPEGSGGNLLNLSRTGQSIMTEQLPQQSWTPKYPPVQVNAFGNLMSHVQYTGKDSASAPPHCTTDAQNPTLFGVNIDSSVLLLPTTVPGYTSSSVDTDTSTVQIGDSGFQGSLYGCMQDSSELLQNSGQVDSKNPTPIFVKVYKSGSVGRSLDISRFSSYHELREELAQMFGIEGKLEDPLRSGWQLVFVDRENDILLLGDDPWESFVNNVWYIKILSPEDIQKMGEQVVESLGPNAG 815
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1388 815 Pfam Auxin response factor 253 336 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bisa05g1388 815 Pfam AUX/IAA family 707 798 IPR033389 -
Bisa05g1388 815 SUPERFAMILY DNA-binding pseudobarrel domain 112 256 IPR015300 -
Bisa05g1388 815 Gene3D - 291 363 - -
Bisa05g1388 815 Gene3D - 711 803 - -
Bisa05g1388 815 SMART B3_2 127 229 IPR003340 GO:0003677
Bisa05g1388 815 FunFam Auxin response factor 125 229 - -
Bisa05g1388 815 ProSiteProfiles B3 DNA-binding domain profile. 127 229 IPR003340 GO:0003677
Bisa05g1388 815 FunFam Auxin response factor 709 803 - -
Bisa05g1388 815 SUPERFAMILY CAD & PB1 domains 705 788 - -
Bisa05g1388 815 Pfam B3 DNA binding domain 127 228 IPR003340 GO:0003677
Bisa05g1388 815 ProSiteProfiles PB1 domain profile. 714 798 IPR000270 GO:0005515
Bisa05g1388 815 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 16 803 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bisa05g1388 815 FunFam Auxin response factor 291 363 - -
Bisa05g1388 815 CDD B3_DNA 126 227 IPR003340 GO:0003677
Bisa05g1388 815 Gene3D - 125 228 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1388 Bisa-ChrBisa05 24455060 24464638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1388 97 805 B3 DNA Binding Superfamily AT5G37020 67.729 0.0 902
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bisa05g1388 AUX_IAA 7.5e-08 CL0072