Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1349 ATGGCTGATTGTTTCCTTCTTGAACACCTTCATCTTATAGCTTTGTTCATGGACCTGCCAGATTGCTCTTCCGTAAGAGAATATAAATTGTTCAATGTTTTGACTAATAAGCAAGAGATGGATGAATATTCTGGTAAACGAGCCATTGATGGGGTGGTAGTTCCTAAAAAGGGAATGGCTCATGTATTTAGAGATACCGCTAATACAAGGGACCGTAATGGTCAGTTGTGCAGTCGACTTGGTTGTAGCAGCAGGGTTAACTCTCCTAAAGGTGCTCAGATTGGTTCATCTGAAAAAGGTAAATCTTTGAGGCATTCATCAATCCAGACCCCTTCAAGTCGCAAGGAAGCAATCGGAAGTTCCTCTAGAACTTATCCAGGATCTAGTAACCCGGGAAAATCCCTTATAGTGCCGCGGAAAACAATATCTTCTCAGTTAGAGACAGTTTCATGTGAAACTAATAGTTCACAGGATGAAACTGAAACTTCAGAGCTTATCCCTCCACCTGAAAAAATTCAAAGAGGGCTTCAAGCCGAAGTGGAGAATACAGAGTCCAACAATGTGCCAATAGAAGTAGGAAGCTCTAGTGTAGCATCAAGCACAAGATGTAGAAGGAATCTTCATCAAAAACCTGAATTGACTGGTCAAGAAATTAAAAGTGATGGCCCAGTGACACGTGCTGGAACCAGCAGGTGTGGACTGAGGAACCTCAGATGCAACTCTATATCTGATGTCATCCCAGCAGGTTGTTCATCATCAGATTCAACTATGAATAGAAGGAAAGATTTATTGAAAAAGAGAATTTGTGAAGGGGAAAGTAGTTCCACTGCTAGGGGGAAGAAGATGAGTGGCTCTTCATTGGACGGACAGAATTCTGGTCCCAGAAATGGCATATCTATCTCTGACTCAAGAAGATCCAGAAATACTCCTCCTCACAGGGACAACAACATCACATCAGTTAGAACTCGAAGATCATCAAATGGTCATGCCCGGGGACGGATTTCTAGCCAAGCAAATGAAAACCCTGCACCACCCCGTGAGTCTCCTGTCACTACATTGCCTTTGCATCAGTCTGGTGACCTTAATGCTCATGATTTAATACATCATACCTCAATGGAGACTACTTTAAGCAGTCCACAATCTTTTAGTAGACCAAGTAGTAGCAGTGAGCAATTGTTTGGCATTATGTCTGGGTCTCCTGCAGAATTTGGGATCACTCGATCTCTAATAAATCAGACCAGCTTTCGGCGCCACCACATGGATGGTATTGCAGAGGTATTATTGGCACTTGAGAGGATTGAACAAGATGAAGATCTAACTCATGAGCAAATTCTTTTACTGGAGACCAACTTGTTCCTTAATGGACTAAACTTCTACGATCAGCATAGAGACATGCGATTGGATATTGATAACATGTCATACGAGGAACTATTAGCTCTGGAAGAGAGTATGGGCTCTGTGAGCACAGCTCTAACAGAGGAAGCACTTTCAAAATGTCTAAAGCGAAGTTTCTATCAATACGCACCTTCAGATTATACAGCCGAGAGTAGTAATGAGGATAAGGATGATACAAAATGCAGCATCTGCCAGGAGGAATATGTGGAAAGAGAAGAAGTGGGGAGTCTGCAATGCGAGCATAGGTATCATATGGGTTGCATACAGGAATGGCTGCGCCTCAAGAACTGGTGTCCTATTTGCAGAGCATCAGCAGCACCATCAAATTCATCTTCTTAA 1734 0.4262 MADCFLLEHLHLIALFMDLPDCSSVREYKLFNVLTNKQEMDEYSGKRAIDGVVVPKKGMAHVFRDTANTRDRNGQLCSRLGCSSRVNSPKGAQIGSSEKGKSLRHSSIQTPSSRKEAIGSSSRTYPGSSNPGKSLIVPRKTISSQLETVSCETNSSQDETETSELIPPPEKIQRGLQAEVENTESNNVPIEVGSSSVASSTRCRRNLHQKPELTGQEIKSDGPVTRAGTSRCGLRNLRCNSISDVIPAGCSSSDSTMNRRKDLLKKRICEGESSSTARGKKMSGSSLDGQNSGPRNGISISDSRRSRNTPPHRDNNITSVRTRRSSNGHARGRISSQANENPAPPRESPVTTLPLHQSGDLNAHDLIHHTSMETTLSSPQSFSRPSSSSEQLFGIMSGSPAEFGITRSLINQTSFRRHHMDGIAEVLLALERIEQDEDLTHEQILLLETNLFLNGLNFYDQHRDMRLDIDNMSYEELLALEESMGSVSTALTEEALSKCLKRSFYQYAPSDYTAESSNEDKDDTKCSICQEEYVEREEVGSLQCEHRYHMGCIQEWLRLKNWCPICRASAAPSNSSS 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1349 577 MobiDBLite consensus disorder prediction 373 393 - -
Bisa05g1349 577 FunFam E3 ubiquitin-protein ligase arkadia 488 572 - -
Bisa05g1349 577 SMART ring_2 526 566 IPR001841 -
Bisa05g1349 577 MobiDBLite consensus disorder prediction 265 357 - -
Bisa05g1349 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 506 575 IPR013083 -
Bisa05g1349 577 Pfam Ring finger domain 525 567 IPR001841 -
Bisa05g1349 577 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 113 571 IPR045191 GO:0061630
Bisa05g1349 577 MobiDBLite consensus disorder prediction 87 163 - -
Bisa05g1349 577 MobiDBLite consensus disorder prediction 207 227 - -
Bisa05g1349 577 ProSiteProfiles Zinc finger RING-type profile. 526 567 IPR001841 -
Bisa05g1349 577 MobiDBLite consensus disorder prediction 87 170 - -
Bisa05g1349 577 MobiDBLite consensus disorder prediction 312 357 - -
Bisa05g1349 577 MobiDBLite consensus disorder prediction 276 305 - -
Bisa05g1349 577 SUPERFAMILY RING/U-box 519 570 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1349 Bisa-ChrBisa05 23850462 23853918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1349 405 570 C3H Transcription Factor Family AT2G15530 40.361 6.37e-34 135
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g1349 05 23850462 23853918 Bisa05g1349 05 23850462 23853918 ECH