Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1335 ATGTCTCGTGTGTATGTTGGTAACTTGGACTCAAGAGTTTCTGAGAGAGATCTGGAAGATGAATTTCGTGTATTTGGAGTTATAAGGAGTGTCTGGGTTGCACGGAGACCACCTGGCTATGCCTTTATTGATTTTGATGACCGCAGAGATGCACAAGATGCTATTCGTGAATTAGATGGTAAGAATGGTTGGAGGGTGGAGCTTTCTCACAACTCTAGAGGTGGAGGTGGAGGTGGTGGTCGCGGAGGTGGTCGTGGTCGCTCTGGTGGCTCTGATTTGAAATGTTATGAGTGTGGTGAACCAGGTCATTTTGCTCGTGAATGTCGTATGCGTGGTGGTTCAGGAAGACGTCGTAGCCGCAGTCCACCTCGATTCCGCAGGAGCCCAAGTTATGGGCGGAGGAGTTACAGTCCTCGTGGTGGTCGGTCCCCTAGGCGCCGCAGTTTGTCACCTCGTGGACGCAGCTACAGCAAATCACCTCCTTACCGTGGTCGGGAGGAGCTACCATATACTAATGGAAATGGCCTAAGGGAACGACGCCGAAGCAGAAGTTGA 555 0.5135 MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGGRSPRRRSLSPRGRSYSKSPPYRGREELPYTNGNGLRERRRSRS 184
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1335 184 CDD RRM_SRSF3_like 3 71 - -
Bisa05g1335 184 FunFam Serine/arginine-rich splicing factor RSZ22A 91 152 - -
Bisa05g1335 184 MobiDBLite consensus disorder prediction 99 114 - -
Bisa05g1335 184 SUPERFAMILY RNA-binding domain, RBD 3 89 IPR035979 GO:0003676
Bisa05g1335 184 SUPERFAMILY Retrovirus zinc finger-like domains 87 111 IPR036875 GO:0003676|GO:0008270
Bisa05g1335 184 Gene3D - 89 146 - -
Bisa05g1335 184 MobiDBLite consensus disorder prediction 66 184 - -
Bisa05g1335 184 SMART rrm1_1 3 69 IPR000504 GO:0003723
Bisa05g1335 184 Gene3D - 2 69 IPR012677 -
Bisa05g1335 184 FunFam serine/arginine-rich splicing factor RSZ22-like 1 93 - -
Bisa05g1335 184 ProSiteProfiles Zinc finger CCHC-type profile. 94 109 IPR001878 GO:0003676|GO:0008270
Bisa05g1335 184 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Bisa05g1335 184 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Bisa05g1335 184 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 164 - -
Bisa05g1335 184 Pfam Zinc knuckle 94 109 IPR001878 GO:0003676|GO:0008270
Bisa05g1335 184 SMART c2hcfinal6 94 110 IPR001878 GO:0003676|GO:0008270
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Bisa05g1335 Bisa-ChrBisa05 23540085 23543125 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1335 2 60 Eukaryotic Initiation Factors Gene Family AT2G36660 39.683 6.63e-06 43.9
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g1335 05 23540085 23543125 Bisa05g1335 05 23540085 23543125 ECH