Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Bisa05g1335 | ATGTCTCGTGTGTATGTTGGTAACTTGGACTCAAGAGTTTCTGAGAGAGATCTGGAAGATGAATTTCGTGTATTTGGAGTTATAAGGAGTGTCTGGGTTGCACGGAGACCACCTGGCTATGCCTTTATTGATTTTGATGACCGCAGAGATGCACAAGATGCTATTCGTGAATTAGATGGTAAGAATGGTTGGAGGGTGGAGCTTTCTCACAACTCTAGAGGTGGAGGTGGAGGTGGTGGTCGCGGAGGTGGTCGTGGTCGCTCTGGTGGCTCTGATTTGAAATGTTATGAGTGTGGTGAACCAGGTCATTTTGCTCGTGAATGTCGTATGCGTGGTGGTTCAGGAAGACGTCGTAGCCGCAGTCCACCTCGATTCCGCAGGAGCCCAAGTTATGGGCGGAGGAGTTACAGTCCTCGTGGTGGTCGGTCCCCTAGGCGCCGCAGTTTGTCACCTCGTGGACGCAGCTACAGCAAATCACCTCCTTACCGTGGTCGGGAGGAGCTACCATATACTAATGGAAATGGCCTAAGGGAACGACGCCGAAGCAGAAGTTGA | 555 | 0.5135 | MSRVYVGNLDSRVSERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGGGRGGGRGRSGGSDLKCYECGEPGHFARECRMRGGSGRRRSRSPPRFRRSPSYGRRSYSPRGGRSPRRRSLSPRGRSYSKSPPYRGREELPYTNGNGLRERRRSRS | 184 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Bisa05g1335 | 184 | CDD | RRM_SRSF3_like | 3 | 71 | - | - | |
Bisa05g1335 | 184 | FunFam | Serine/arginine-rich splicing factor RSZ22A | 91 | 152 | - | - | |
Bisa05g1335 | 184 | MobiDBLite | consensus disorder prediction | 99 | 114 | - | - | |
Bisa05g1335 | 184 | SUPERFAMILY | RNA-binding domain, RBD | 3 | 89 | IPR035979 | GO:0003676 | |
Bisa05g1335 | 184 | SUPERFAMILY | Retrovirus zinc finger-like domains | 87 | 111 | IPR036875 | GO:0003676|GO:0008270 | |
Bisa05g1335 | 184 | Gene3D | - | 89 | 146 | - | - | |
Bisa05g1335 | 184 | MobiDBLite | consensus disorder prediction | 66 | 184 | - | - | |
Bisa05g1335 | 184 | SMART | rrm1_1 | 3 | 69 | IPR000504 | GO:0003723 | |
Bisa05g1335 | 184 | Gene3D | - | 2 | 69 | IPR012677 | - | |
Bisa05g1335 | 184 | FunFam | serine/arginine-rich splicing factor RSZ22-like | 1 | 93 | - | - | |
Bisa05g1335 | 184 | ProSiteProfiles | Zinc finger CCHC-type profile. | 94 | 109 | IPR001878 | GO:0003676|GO:0008270 | |
Bisa05g1335 | 184 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 2 | 73 | IPR000504 | GO:0003723 | |
Bisa05g1335 | 184 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 4 | 61 | IPR000504 | GO:0003723 | |
Bisa05g1335 | 184 | PANTHER | SERINE/ARGININE RICH SPLICING FACTOR | 2 | 164 | - | - | |
Bisa05g1335 | 184 | Pfam | Zinc knuckle | 94 | 109 | IPR001878 | GO:0003676|GO:0008270 | |
Bisa05g1335 | 184 | SMART | c2hcfinal6 | 94 | 110 | IPR001878 | GO:0003676|GO:0008270 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Bisa05g1335 | Bisa-ChrBisa05 | 23540085 | 23543125 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Bisa05g1335 | 2 | 60 | Eukaryotic Initiation Factors Gene Family | AT2G36660 | 39.683 | 6.63e-06 | 43.9 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Bisa05g1335 | 05 | 23540085 | 23543125 | Bisa05g1335 | 05 | 23540085 | 23543125 | ECH |