Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1331 ATGCAACAGAGGCTCAAGCTTCAGCAACAGCAAGCCCTCATGCAGCAAGCGTTGCTTCAGCAACAGCAGTTGTATCACCCCGGAATGCTAGCCGCCACTATGTCTCAGATGGAGCCTGTTCCAAGTGGTACTCTGCCTCCCGGTTTTGACACTTCTACATGCCGCAGTGTTTATGTAGGAAATATTCATGTAAATGTCACTGAAAAACTTCTGGCTGAAGTCTTTCAGAGTGCCGGTCCTCTTGCTGGGTGCAAGCTCATCAGAAAAGAAAAGTCCTCTTATGGTTTTGTGGATTACCATGATCGAGCATCTGCAGCCCTTGCAATTATGACATTGCATGGACGCCAACTATATGGTCAAGCACTTAAGGTGAATTGGGCATATGCGAGTACCCACAGGGAGGATACTTCAGGGCACTTCAATATATTTGTTGGTGATTTGAGTCCAGAGGTTACTGATGCAACTTTATTTGCATGCTTCTCAGTCTATCCTAGTTGTTCTGACGCAAAGGTTATGTGGGATCTCAAAACTGGTCGGTCGAAAGGTTATGGTTTTGTTTCTTTCCGTGACCAGCAGGATGCCCAAAGTGCCATCAATGATATGACTGGTAAGTGGCTGGGAAATAGGCAAATACGATGCAACTGGGGAACTAAGGGTGCTGGTACAAGTATCAATGAGGAGAAGAATAATGACACCCAAAACGCTGTTGTTCTTACAAATGGATCTTCAGAAGGAGGTCAGGAATATAACAATGACGATGCTCCTGAAAACAGTCTAGCCTACACCACTGTTTATGTTGGCAACCTTCCCCATGATGTAACACAAGCTGAACTCCACTATCAGTTCCATGCACTGGGGGCTGGGGTTATTGAGGAGGTCCGAGTTCAAAGGGATAAAGGTTTTGGATTTGTTAGATACAACACTCATGAAGAAGCAGAGTTGGCCATTCAGATGGCTAATGGAAAAATAATTCGCGGAAAGACAATGAAGTGTTCTTGGGGTAGCAAGCCAACTCCTCCCGGAACAGTTTCGAATCCACTTCCTCCCCCTGCTCAACCTTACCAAATCCTTCCCACAACAGGGATGAATCCAGGCTATTCTCCGACTGAATTATTGGCTTATCAGCGCCAACTTGCCTTAGGTCCGGCTGCCGTATCTGGCCTTTCGGGTCAAGCTCTTGTGCATATGACTGGACAACATGGCCTTGCTGCTGCTTCCATCGGCTTAAGCTCTGGGGGATCCCAAGCCATGTATGATGCATATTCTGGCAATTCTTCAAGGCAGCACCTCATGTACTATCGTTAG 1305 0.4659 MQQRLKLQQQQALMQQALLQQQQLYHPGMLAATMSQMEPVPSGTLPPGFDTSTCRSVYVGNIHVNVTEKLLAEVFQSAGPLAGCKLIRKEKSSYGFVDYHDRASAALAIMTLHGRQLYGQALKVNWAYASTHREDTSGHFNIFVGDLSPEVTDATLFACFSVYPSCSDAKVMWDLKTGRSKGYGFVSFRDQQDAQSAINDMTGKWLGNRQIRCNWGTKGAGTSINEEKNNDTQNAVVLTNGSSEGGQEYNNDDAPENSLAYTTVYVGNLPHDVTQAELHYQFHALGAGVIEEVRVQRDKGFGFVRYNTHEEAELAIQMANGKIIRGKTMKCSWGSKPTPPGTVSNPLPPPAQPYQILPTTGMNPGYSPTELLAYQRQLALGPAAVSGLSGQALVHMTGQHGLAAASIGLSSGGSQAMYDAYSGNSSRQHLMYYR 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1331 434 Gene3D - 1 138 IPR012677 -
Bisa05g1331 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 262 336 IPR000504 GO:0003723
Bisa05g1331 434 SUPERFAMILY RNA-binding domain, RBD 40 133 IPR035979 GO:0003676
Bisa05g1331 434 FunFam Oligouridylate-binding protein 1C 239 340 - -
Bisa05g1331 434 FunFam Nucleolysin TIAR-like protein 1 138 - -
Bisa05g1331 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 57 123 IPR000504 GO:0003723
Bisa05g1331 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 264 330 IPR000504 GO:0003723
Bisa05g1331 434 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 212 IPR000504 GO:0003723
Bisa05g1331 434 SUPERFAMILY RNA-binding domain, RBD 253 344 IPR035979 GO:0003676
Bisa05g1331 434 Gene3D - 139 218 IPR012677 -
Bisa05g1331 434 SMART rrm1_1 56 125 IPR000504 GO:0003723
Bisa05g1331 434 SMART rrm1_1 141 214 IPR000504 GO:0003723
Bisa05g1331 434 SMART rrm1_1 263 332 IPR000504 GO:0003723
Bisa05g1331 434 Gene3D - 239 340 IPR012677 -
Bisa05g1331 434 CDD RRM2_PUB1 139 218 - -
Bisa05g1331 434 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 46 339 - -
Bisa05g1331 434 FunFam Nucleolysin TIAR-like protein 139 237 - -
Bisa05g1331 434 SUPERFAMILY RNA-binding domain, RBD 134 220 IPR035979 GO:0003676
Bisa05g1331 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Bisa05g1331 434 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 55 129 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1331 Bisa-ChrBisa05 23429899 23435924 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1331 56 330 Eukaryotic Initiation Factors Gene Family AT3G16380 28.082 3.63e-20 90.9