LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa05g1314	ATGGAGCCAAAACCGGCTGGCTTTATGGCCGCCTACCCTATGAATAATCAATCTCATGCTGATTCGTCGATTTTTTCCGTCATCGGAGGTGGCGATTTTTCACGGATCCCATCGGAGCTGGATCTGGATGAGTTTGTGAGCAAGGAAGTGATAGTACCAGAAAGAATGAATGGATCGGTGAATGACGAGGACGTGAAATCAGGCGACCGGTGTCAGAGAAACAGAGCTTTCGCCGAGACCGATGCATTTTTCGGAGACGTTTGCTCCGATTACCTCGACGCCGCTTTTCAAAATACGGATTCGATGAGTGGATTTTCAGCTTGTGGTGAACTAGCAGATCCCATTTTCTGTTCCCAAAAAGTCACTCCCAATCCTTCTACCATCTCTGCTACCATTGAGTCTCAGTCATCGATTTGTGGCACTGTTGGAAGCCCTGTGTCAGCTAATAAGCCAAACCCAAGAGATAATCAAGCAAAAGGAGCTTCAAGTGGTTCTTCACAAGAGCAGTCTGATGAGGACGATGCAGCGGGTCCTTGTGAACAGAGCGTGGATCCCGTTGATAAGCGGGATAGAAGAAAGAAATCTAATCGGGAGTCTGCTAGGAGATCAAGAACAAGAAAGCAAGCGCATCTGGTTGGCCTGGAGTTGCAGGTTGAACAACTGAGAGTGGAAAATGCAACCCTATACAAGCAGCTTACAGATGCCTTTCAACAATTTAGTGAGGCTGATACAAACAAACGAGTGCTAAAATCTGATGTCGAAGCTCTGAGAGCCAAGGTGAAATTAGCTGAAGATATTGTGGCTCGTGGCAACTTAACCCCCTTACGCAACCAGGCTCTTCCGACTCTCCTGCACCCACCACCACAACTTAACACCACTAGCCTGCGCCGAATGGCACATGCGTCTCCAACCATCAATGTCCATGGCGATGAGGACTCATATGCTGCTATGGCACTTGGCGCTCAGAATTCAGCTCTTGGACTTGGAAACTTAGATATCACTAATAACAACTTCAACACTGGAGTCATAAGCGATACTGTGAGCTGTGTGACTGATGATCATATGTGGGCGCCATAA	1077	0.4754	MEPKPAGFMAAYPMNNQSHADSSIFSVIGGGDFSRIPSELDLDEFVSKEVIVPERMNGSVNDEDVKSGDRCQRNRAFAETDAFFGDVCSDYLDAAFQNTDSMSGFSACGELADPIFCSQKVTPNPSTISATIESQSSICGTVGSPVSANKPNPRDNQAKGASSGSSQEQSDEDDAAGPCEQSVDPVDKRDRRKKSNRESARRSRTRKQAHLVGLELQVEQLRVENATLYKQLTDAFQQFSEADTNKRVLKSDVEALRAKVKLAEDIVARGNLTPLRNQALPTLLHPPPQLNTTSLRRMAHASPTINVHGDEDSYAAMALGAQNSALGLGNLDITNNNFNTGVISDTVSCVTDDHMWAP	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa05g1314	358	Pfam	bZIP transcription factor	187	233	IPR004827	GO:0003700\|GO:0006355
	Bisa05g1314	358	Coils	Coil	246	266	-	-
	Bisa05g1314	358	Gene3D	-	187	241	-	-
	Bisa05g1314	358	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	191	206	IPR004827	GO:0003700\|GO:0006355
	Bisa05g1314	358	PANTHER	BASIC LEUCINE ZIPPER 63	23	336	-	-
	Bisa05g1314	358	Coils	Coil	211	231	-	-
	Bisa05g1314	358	FunFam	BZIP transcription factor	187	237	-	-
	Bisa05g1314	358	MobiDBLite	consensus disorder prediction	142	172	-	-
	Bisa05g1314	358	SMART	brlzneu	184	262	IPR004827	GO:0003700\|GO:0006355
	Bisa05g1314	358	CDD	bZIP_plant_GBF1	189	240	IPR045314	GO:0003700\|GO:0006355
	Bisa05g1314	358	MobiDBLite	consensus disorder prediction	142	207	-	-
	Bisa05g1314	358	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	186	232	IPR004827	GO:0003700\|GO:0006355
	Bisa05g1314	358	SUPERFAMILY	Leucine zipper domain	188	237	IPR046347	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa05g1314	Bisa-ChrBisa05	23154605	23157631	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa05g1314	92	356	bZIP Transcription Factor Family	AT5G24800	48.708	5.67e-61	195

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Bisa05g1314		bZIP_1	1.9e-11	CL0018