LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa05g1240	ATGGACCACGTGGCGGATATACGTCACTCGACCGTTGCAAAGCCCATATTGAATAATTCTGGCTTTCCCGTCCTTCAGCTCTTCATTCGTCCTCGTCCCTCTTTCTCGAATCGTAATTCTCTGATCTCTGTCTATCGCGAACCAATGGCGATTGCAACAGAGACGCAGCCTCAACCTCGAGACAAGACTTCTGAGGTTTCAGCTGCGGAGAATAGAAGGTGGACCCTCAACGACTTTGACATTGGAAAACCTCTTGGACGGGGAAAATTTGGTCATGTCTATTTGGCCAGAGAAAAGAGAAGTAATCATATTGTTGCTCTGAAAGTCCTTTTTAAGAGCCAATTGCAACAGTCCCAAGTTGAGCATCAGCTTAGGCGAGAAGTTGAAATCCAAAGTCATCTGCGGCATCCCAACATCTTGCGCCTTTATGGATATTTTTATGATCAGAAACGAGTTTATTTGATTTTAGAGTATGCAGCCAAAGGTGAACTTTACAAGGAATTACAGAAATGCAAATATTTCAGTGAACGCCGTGCAGCTACTTATGTTGCATCATTGGCCCGAGCTCTCATATATTGCCACGGAAAGCATGTAATACACAGGGACATTAAACCTGAGAACCTTCTTATTGGTGCACAGGGTGAACTGAAAATAGCTGATTTTGGATGGTCGGTGCACACATTTAACCGCAGGCGGACCATGTGTGGAACATTGGATTACCTCCCCCCGGAGATGGTGGAAAGCGTAGAACATGATGCAAGTGTCGATATATGGAGCCTTGGTGTCCTGTGTTATGAGTTTCTTTATGGAGTCCCACCTTTTGAGGCTAAGGAACATTCTGAGACATATAGAAGGATTATCCAAGTGGATCTCAAGTTCCCTCCCAAACCAGCTGTGTCTTCTGCTGCAAAGGACCTCATCAGTCAGATGCTGGTTAAGGATTCCTCTCAACGTCTGCCATTGCACAAACTTCTGGAACATCCTTGGATTGTTCAGAACGCAGAGCCCTCTGGTTTATACAAGTGCTAG	1029	0.4519	MDHVADIRHSTVAKPILNNSGFPVLQLFIRPRPSFSNRNSLISVYREPMAIATETQPQPRDKTSEVSAAENRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPNILRLYGYFYDQKRVYLILEYAAKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSETYRRIIQVDLKFPPKPAVSSAAKDLISQMLVKDSSQRLPLHKLLEHPWIVQNAEPSGLYKC	342

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa05g1240	342	SMART	serkin_6	79	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa05g1240	342	FunFam	Aurora kinase A	71	162	-	-
	Bisa05g1240	342	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	198	210	IPR008271	GO:0004672\|GO:0006468
	Bisa05g1240	342	Gene3D	Transferase(Phosphotransferase) domain 1	163	339	-	-
	Bisa05g1240	342	Gene3D	Phosphorylase Kinase; domain 1	67	162	-	-
	Bisa05g1240	342	PANTHER	SERINE/THREONINE-PROTEIN KINASE IAL-RELATED	63	338	IPR030616	GO:0004672
	Bisa05g1240	342	FunFam	serine/threonine-protein kinase Aurora-1	163	338	-	-
	Bisa05g1240	342	SUPERFAMILY	Protein kinase-like (PK-like)	66	334	IPR011009	-
	Bisa05g1240	342	CDD	STKc_Aurora	78	331	-	-
	Bisa05g1240	342	ProSitePatterns	Protein kinases ATP-binding region signature.	85	108	IPR017441	GO:0005524
	Bisa05g1240	342	ProSiteProfiles	Protein kinase domain profile.	79	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa05g1240	342	Pfam	Protein kinase domain	81	330	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa05g1240	Bisa-ChrBisa05	21770278	21773303	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa05g1240	70	341	CBL-interacting serine-threonine protein kinases	AT5G10930	35.842	1.17e-54	183

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	Aur	Bisa05g1240		Pkinase	4.1e-74	CL0016