Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1209 ATGGATAGTGCAAGCCTTAATGCCTCCGAGTTAAAGGAGCGCAACTACATGGGATTTTCTGATTCTTCCTCGGTGGACTCGGTCCTGTCCTTCTCAGATGAGAGTAAAAGCAATCTGAACCTGAAAGCCACAGAGCTCAGGCTCGGGCTTCCGGGAAGTCAGTCCCCCGAGAGAAACTCAGATCTCAGCTTGAGAAGCTCAACTCAATTTAATGAGAAACCTTTGTTTCCTTTACGCCCTTTAACTGATGATCACCACTCCTCAACAAAGACTGCTCTTTTGGGTAGCAAAAGAGGCTTCTCAGATGCCATGAATGGGTTCTCAGAGGGGAAATTCATTCCTAATTCAGATGTCAATACTGTACTGTCCCCCAGGCCTTCTCATAACTTGGGACTAAAAACTAGTCCTATGCTTGAGAATATCGGGGGTCAGCCTCAGCAAGCCAAAGCAAAAGAAGTAGCACCAACAAAGGCAGCGCATGAGAGGCCTCATGCTGTCAATGAAACCAGACCAAATCTTGAAGGCTCTGCAAATAATAATAGCAATGCACCGGCCACCAAGGCACAGGTTGTGGGTTGGCCACCTATAAGATCATTTAGGAAAAATTCATTGGCTACTACTTCAAAGAACACTGATGAAGTAGATGGAAAAGCGGGGCCTGGTGCGCTGTTTATCAAAGTCAGTATGGATGGTGCTCCATATTTAAGGAAAGTAGATTTGAAGAACTACTCTGCATATCCAGAACTATCTTCTGCTCTGGAGAAGATGTTCAGCTGTTTTACCATAGGTCAATGTGGATCTCATGGAAGTCTAGGCAGGGAGGTTCTAAATGAAAGCAAGCTGAAGGATCTGCTTCATGGGTCAGAATATGTTCTAACTTATGAGGATAAAGACAGCGACTGGATGCTTGTGGGCGATGTTCCTTGGGAGATGTTCATTGATACATGCAAGAGGCTGAGGATCATGAAGAGTGCTGATGCCATTGGTCTAGCTCCCAGGGCTGTGGAAAAAAGTAAGAGTAGGAACTAG 1029 0.4548 MDSASLNASELKERNYMGFSDSSSVDSVLSFSDESKSNLNLKATELRLGLPGSQSPERNSDLSLRSSTQFNEKPLFPLRPLTDDHHSSTKTALLGSKRGFSDAMNGFSEGKFIPNSDVNTVLSPRPSHNLGLKTSPMLENIGGQPQQAKAKEVAPTKAAHERPHAVNETRPNLEGSANNNSNAPATKAQVVGWPPIRSFRKNSLATTSKNTDEVDGKAGPGALFIKVSMDGAPYLRKVDLKNYSAYPELSSALEKMFSCFTIGQCGSHGSLGREVLNESKLKDLLHGSEYVLTYEDKDSDWMLVGDVPWEMFIDTCKRLRIMKSADAIGLAPRAVEKSKSRN 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1209 342 ProSiteProfiles PB1 domain profile. 222 324 IPR000270 GO:0005515
Bisa05g1209 342 MobiDBLite consensus disorder prediction 47 89 - -
Bisa05g1209 342 MobiDBLite consensus disorder prediction 53 73 - -
Bisa05g1209 342 SUPERFAMILY CAD & PB1 domains 220 323 - -
Bisa05g1209 342 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 39 328 IPR003311 GO:0005634|GO:0006355
Bisa05g1209 342 Gene3D - 217 336 - -
Bisa05g1209 342 MobiDBLite consensus disorder prediction 155 186 - -
Bisa05g1209 342 FunFam Auxin-responsive protein 217 334 - -
Bisa05g1209 342 MobiDBLite consensus disorder prediction 171 186 - -
Bisa05g1209 342 Pfam AUX/IAA family 44 333 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1209 Bisa-ChrBisa05 21050619 21053071 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1209 236 327 B3 DNA Binding Superfamily AT1G19220 31.522 9.79e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Bisa05g1209 AUX_IAA 1.7e-90 CL0072