Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1194 ATGGGGAGAGGGAAGATCGTGATAAGGAGGATCGACAATTCGACGAGCAGGCAAGTGACCTTCTCGAAGCGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTGGCAATCCTGTGCGATGCTGAGGTAGGAGTCATGATCTTCTCCAGCACCGGCAAGCTCTATGATTTCGCCAGCACAAGCATGAAATCAATAATTGAACGTTACAAGAAAGCAAAAGAGGAACAACATCAACTTGGAAGTTCAACCTCTGAAGTAAAGTATTGGCAAAAGGAGGCAGCAATGTTAAGGCAACAATTGCAGAACTTACAAGAAAGTCACCGGCAAATGATGGGAGAAGAACTTTCAAGTTTGACTGTCAAAGAATTACAGAGCTTGGAGAGCCAACTAGAAATTAGCCTTCGAGGTGTCCGTTTGAAAAAGGATCAATTTTTAATGGATGAAATACAGGAACTAAACCAAAAGGGAAACCTTTTACACCAGGAAAATATGGAACTGTGCAAGAAGTTAAACCAAATTTGTCAAGAAAACATGGAATTAAAAAAGAAGGTAGTGGTCTATGGAACAAGAGATGGAAATGGAACAAACAGAAATCCTGTTCTCACCAATGGTCTAGGCATAGGAGAGGATTTGCATGTGCCTGTAAATCTCCAGCTTAGCCAGCCTCATCAACAAAACTATGAGACACCCTCAGGGGCCACAAACTTGGGGTAA 714 0.4286 MGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASTSMKSIIERYKKAKEEQHQLGSSTSEVKYWQKEAAMLRQQLQNLQESHRQMMGEELSSLTVKELQSLESQLEISLRGVRLKKDQFLMDEIQELNQKGNLLHQENMELCKKLNQICQENMELKKKVVVYGTRDGNGTNRNPVLTNGLGIGEDLHVPVNLQLSQPHQQNYETPSGATNLG 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1194 237 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa05g1194 237 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa05g1194 237 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Bisa05g1194 237 Coils Coil 163 183 - -
Bisa05g1194 237 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa05g1194 237 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 209 - -
Bisa05g1194 237 Gene3D - 13 95 IPR036879 GO:0003677|GO:0046983
Bisa05g1194 237 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Bisa05g1194 237 FunFam MADS-box transcription factor MADS-MC 13 85 - -
Bisa05g1194 237 Coils Coil 86 113 - -
Bisa05g1194 237 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa05g1194 237 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa05g1194 237 Pfam K-box region 82 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa05g1194 237 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa05g1194 237 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa05g1194 237 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1194 Bisa-ChrBisa05 20711354 20733110 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1194 1 233 MADS-box Gene Family AT2G22630 58.798 8.69e-92 268
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa05g1194 K-box 8.3e-28 No_clan