Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1167 ATGTACTATATTCTTCTTGCCATAATACGGGAGAAGACATATATTGATCCGGAGGATAAAAGGATGCACAAGTGGAAAATGCAGTGCAGGTGGTGCAATTATCAACACAAAAGTGATTGCAGACAGCTAAGAAAATATTGGAAAACTGAAGACGGAATTTTACTTTGCTCTGCAAAAGTCCATTGTTTTAGCTATAAAAGGGAATCCCTTCCTTTTTCCATTCCTGAACCAAACCATCCATCCTTCCGTCTCTTTAATCAGAGAAATATCTATCTATCTATCAAGATCAAGAAAATAGACAACGTGACGGCGAGGCAGGTGACGTTCTCAAAGAGAAGACGAGGGCTTTTCAAGAAAGCCTCAGAGCTTTCAGTTCTGTGCGATGCTGATGTTGGTCTCATTATTTTCTCTGCTACAGGCAAGCTCTTTGAATACTCAAGCTCCAGTATGAAGGACATAATTACAAGGTATAATCTGCACTCTCGTGACATCAACAAACTGGACAGACCTCTTCTAGAACTGGAGCTAGAGAACAGCAATAACACTAAATTGAGCAAGGAAGTTGCTGAAAAAACGCACCAGTTAAGGCGGATGAAAGGAGAGGATCTTCAAGGACTGAACATAGAAGAATTGCAACATCTGGAGAAAGTTCTTGAAACTGGACTCTCTCGCGTGATTGAGACCAAGGAAAATCGGATTATGAGTGAGATCACTGCACTTCAGAAAAAGGAAGTCGAATTGGCTGAGGAAAACAAACAGCTGAAGCAGAAGATGGAGATGCTGTATAGAGGAGGAACAAGAGGGGTGGGGGTGGAGTCATCAGAAATAGTGTCTTCAGAATCTATGACTAACGTTTGTAGCTGCAACAGTGGCCCTCCTCTTGACGATGATTCCTCTGACACTTCTCTAAAGTTGGGGTTACCCTACTCTAACTGCAATGGGAGTGCATAA 951 0.4206 MYYILLAIIREKTYIDPEDKRMHKWKMQCRWCNYQHKSDCRQLRKYWKTEDGILLCSAKVHCFSYKRESLPFSIPEPNHPSFRLFNQRNIYLSIKIKKIDNVTARQVTFSKRRRGLFKKASELSVLCDADVGLIIFSATGKLFEYSSSSMKDIITRYNLHSRDINKLDRPLLELELENSNNTKLSKEVAEKTHQLRRMKGEDLQGLNIEELQHLEKVLETGLSRVIETKENRIMSEITALQKKEVELAEENKQLKQKMEMLYRGGTRGVGVESSEIVSSESMTNVCSCNSGPPLDDDSSDTSLKLGLPYSNCNGSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1167 316 CDD MADS_MEF2_like 94 163 IPR033896 GO:0000977|GO:0045944
Bisa05g1167 316 SUPERFAMILY SRF-like 94 160 IPR036879 GO:0003677|GO:0046983
Bisa05g1167 316 ProSiteProfiles MADS-box domain profile. 94 149 IPR002100 GO:0003677|GO:0046983
Bisa05g1167 316 Gene3D - 101 169 IPR036879 GO:0003677|GO:0046983
Bisa05g1167 316 Coils Coil 237 260 - -
Bisa05g1167 316 Pfam K-box region 179 258 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa05g1167 316 PANTHER SERUM RESPONSE FACTOR HOMOLOG 94 255 - -
Bisa05g1167 316 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 98 145 IPR002100 GO:0003677|GO:0046983
Bisa05g1167 316 Coils Coil 181 201 - -
Bisa05g1167 316 FunFam Transcription factor, MADS-box 101 171 - -
Bisa05g1167 316 PRINTS MADS domain signature 91 111 IPR002100 GO:0003677|GO:0046983
Bisa05g1167 316 PRINTS MADS domain signature 126 147 IPR002100 GO:0003677|GO:0046983
Bisa05g1167 316 PRINTS MADS domain signature 111 126 IPR002100 GO:0003677|GO:0046983
Bisa05g1167 316 ProSiteProfiles K-box domain profile. 174 264 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa05g1167 316 SMART madsneu2 94 148 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1167 Bisa-ChrBisa05 19896052 19905820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1167 94 311 MADS-box Gene Family AT2G22540 59.746 4.18e-89 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa05g1167 K-box 4.7e-16 No_clan