Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1166 ATGGGTGGTGCAGCTTCTTTCAAGCCATTTCCCAGATTCTTCTTCTTCTTCACCGTCATTCTCATCGCAGAGGCTGCTGGTGATACCACCAGAGAAACCCTTCCTTCTTCAAAGTTGCCTTCCGATGAAATTGGCACTGGAGAACCTCCTCCACCGCCGTTGCCGCCGCCGCCGGGAAATTCCTATGGCGGAGGACGAAGAGGGAGTTCGTTAAAGCCAACCGTGATAATTGTTGTTGGGGTATTGGCCGCTTTGTTCTCTCTTACCTTTCTCCTTGTTCTTTATGCCAGGCACTGTAGGCCAGAGAATGTGCCCCCAACGAATTCCTCTGGAGGCGCTGCTTCTTCGGGGAGGAGGTCCGGCATTGACCGCACTGTCATTGAGTCCTTACCCATTTTCAGATTCGGATCTCTCAAAGGGCAAAAAGACGGCCTCGAATGCGCCGTTTGCCTGAACCGGTTTGAGTGCATGGAGGTTCTTCGGTTGCTTCCCAAATGCAAGCACGCCTTCCATGTCGAATGCGTCGATACGTGGCTGGACGCACATTCCACCTGCCCTCTTTGTCGGAGCCGGGTCGACCCGGAAGACATTTTGCTTGTGGAGGAAGCTAAGGCTGGGACATTCCATACTCCCATTCCGCCGATACAAGAAAACACCGACGATCCGGAGCAACAGCGGGACATAGAAACCGGGCCAGAACAGGGTTCTCTGAGTCGGGTCGACTCGAACTCGATTCTCCGACGAGTCTCCGGGAGGCATTCATCAGTAGGGGAAACAGGAGTAGTTGGAGGAGGAGGAGGCGGTGGAAGTATAACTGCAGCTTTTCTACAGCTTATAATGCAGCAGAGGACCAGCGTGGAGGGCGAAACGCCGACGTCGCAGAAGAAGATGGCGGCGTTGAGAAAATCTGTAGACAGCGCAATTTCCACTAAGAGAAAAAGAAACGAAGCCGTAAAAGAAGGGGGGTCCGACGGTCCCAGAAAAGACGCGCTATTATTGGCGGAAAAGGAAAACAAGCACAGGTTAGAGCACAGGATCATAGTCTCTCCGTCGCCAAAGGCCAATGCGCTGCATCAAAGATGGAGCGACGTACAACCGTCGGATCTTCTCTATCTTACATCGGAGATGATACTGAGGGACCATAGCCACAGATTGTCTTCTTCCTCCCCCGGACCATCGCTACCGCGGCCAAGTCGGCATCAACAGCAGCACCGGAACGAGGCATCGGATAACAGGAACCGCACAGGAGATAACCGGAGGGGAGGAGGGGCAATAAATTTGAGAAGCGTATCGGAAATCACGGGATTGAGCAGGAACAGGAGAGAGGAAGGTCAGCATCATCATCGGGACGAAGAAGAGGAGAGACAGGCGGGAGTAGCATCGAGATGGCGGGCTTGGATTTCTCAGGCGCAACGATCTTTTTTAGATTACAGAGAGGATGGAAGTGGGCATGAGAAGAAGAGAGAATGGGAAGAGACAATCTCTATGGAACACAGTAATCTATTTAAAGAAATTCTTTATCTTTCCCCTGCCACTGCCGTAGAGAGGAAGAGTGATATAATGACGGGCAAGGAAAAAGAAAAAGACTATTTGCAGGTTCAGTGTCCTTTGGAAAATGGGCTTTTCAGTTCTGAGCCTTGGGCCCCTTATGATGTATTTCCTGGTGGACAAGTCCTACTGGATGTGGAAGGTGATTGTAAAGCTGTTCTTGAAAGATTGAATGATTCAGACAATTGGGCAGAATGGATAGTTAAACCAGTACTTTCTAATGTAATTGGGATGTTTCAGTTGGGAGGGGAGACGTGTGAGAAGAAAAGACAATTATCTTGGCTCATAACTCTGCTAAGTGGAAAACTTGTAACTAAGAACTGCCAGGCCCACTGCAAGTCATATGGAATCACGAAATGGGAATTGCAGTATCGAACCATTCTGCATTTCCGGCAACGGTTCTTTCATTGGAATGATTGA 1968 0.501 MGGAASFKPFPRFFFFFTVILIAEAAGDTTRETLPSSKLPSDEIGTGEPPPPPLPPPPGNSYGGGRRGSSLKPTVIIVVGVLAALFSLTFLLVLYARHCRPENVPPTNSSGGAASSGRRSGIDRTVIESLPIFRFGSLKGQKDGLECAVCLNRFECMEVLRLLPKCKHAFHVECVDTWLDAHSTCPLCRSRVDPEDILLVEEAKAGTFHTPIPPIQENTDDPEQQRDIETGPEQGSLSRVDSNSILRRVSGRHSSVGETGVVGGGGGGGSITAAFLQLIMQQRTSVEGETPTSQKKMAALRKSVDSAISTKRKRNEAVKEGGSDGPRKDALLLAEKENKHRLEHRIIVSPSPKANALHQRWSDVQPSDLLYLTSEMILRDHSHRLSSSSPGPSLPRPSRHQQQHRNEASDNRNRTGDNRRGGGAINLRSVSEITGLSRNRREEGQHHHRDEEEERQAGVASRWRAWISQAQRSFLDYREDGSGHEKKREWEETISMEHSNLFKEILYLSPATAVERKSDIMTGKEKEKDYLQVQCPLENGLFSSEPWAPYDVFPGGQVLLDVEGDCKAVLERLNDSDNWAEWIVKPVLSNVIGMFQLGGETCEKKRQLSWLITLLSGKLVTKNCQAHCKSYGITKWELQYRTILHFRQRFFHWND 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1166 655 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 49 468 - -
Bisa05g1166 655 SUPERFAMILY RING/U-box 126 194 - -
Bisa05g1166 655 ProSiteProfiles Zinc finger RING-type profile. 147 189 IPR001841 -
Bisa05g1166 655 MobiDBLite consensus disorder prediction 383 399 - -
Bisa05g1166 655 MobiDBLite consensus disorder prediction 31 66 - -
Bisa05g1166 655 MobiDBLite consensus disorder prediction 306 329 - -
Bisa05g1166 655 MobiDBLite consensus disorder prediction 400 417 - -
Bisa05g1166 655 SMART ring_2 147 188 IPR001841 -
Bisa05g1166 655 Pfam Ring finger domain 146 189 IPR001841 -
Bisa05g1166 655 FunFam RING-H2 finger protein ATL43 122 196 - -
Bisa05g1166 655 MobiDBLite consensus disorder prediction 208 239 - -
Bisa05g1166 655 MobiDBLite consensus disorder prediction 45 60 - -
Bisa05g1166 655 MobiDBLite consensus disorder prediction 435 459 - -
Bisa05g1166 655 MobiDBLite consensus disorder prediction 382 460 - -
Bisa05g1166 655 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 121 196 IPR013083 -
Bisa05g1166 655 CDD RING-H2_EL5-like 146 189 - -
Bisa05g1166 655 MobiDBLite consensus disorder prediction 286 329 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1166 Bisa-ChrBisa05 19842839 19848108 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1166 69 473 C3H Transcription Factor Family AT5G05810 41.822 4.97e-68 226