Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1111 ATGACCACTTGCAGGGAGACTCGTTCTCCTACATCTATCCTCACTTCTCTCTCCAATTCTGATCGTGGCCTCCCTCTCTTTCTCTTCCTCCTCCTCCTCCTCCTCCTTCTACACACCTCATCCCCTGCCTCAGCTCAGGACACCACTCCTCCGCCCCCTCCGGCCCCTCCGCCGCTCCAGCCATTTGCCAGGCTCCGCTTCAATAAATCCATGGGCATCATCTTCGTCATCCTCGTCGTCGTCTTCTTCGTGATAGGATTCATCTCTGTCTACTCACGTCAATGTACAGAACGACGATTCAGAGGCGGCAGGGACCTCGCCAACCAAATCGGCGGCAGCAGCCGCGGGCTCGACCCAGAATTTATTCACGCTTTTCCCACCTTCGTCTACTCCTCCGTCAAAGGGCTTAAGATTGGGAGGAACACGCTAGAATGCGCTGTGTGCTTAAACGAGTTCCAGGACAACGATACGCTGCGTTTCATCCCCAAATGCAATCACGTTTTCCATCCCGATTGCATCGACCTCTGGCTCTCCTCTCACTCCACGTGCCCCGTCTGCCGAGCCAACCTCACTCCCCGCCCCGGCGACACCTCCTTCGTCGCCGTTCAGATCCCCGACTCTGCTCTCCCGCCCGAACCAGAGGAGCAAGACGGTGGCGATGACGTCATCCGTCTCGATCATAACAATGCCAACAGAGTCGGAGATTCGGGTTCCTCCCCGAAGGACAGGGATATCAATATCATCAATTTACTCAATCGGAACCTTTCTACGAATAGGAGCCCTGCGCCGAGGATAAGGTCAACGGGGTTCCGATTTGGCAGCTTGTTTCCGCGTTCTGACTCGACGGGACACTCGCTGGTGTCGCCGGGGAACGATCGGGAAAGGTTCACTCTGAGATTGCCGGAGGAGGTGAGGAAGGAGCTTTTGAGCTCCACGCTGAAGCGAACCAAGAGTTGCGGGACATTGACAAGTATGAGAAGTGAGAGAAGAGGTTTCAGGACGAGAAGCGTGGGTGGCGGAGGAGGGGGCAACTATTTACAATACGAACAGTCCGGGTGCGAGGGGCGGTTGGACCGGTGGGGGTTCTCGTGGACGCCGCCTTTTGTGGGTCGGAGCGGTTCGAGTTGGTCGAGAAAAGGGTCGTCGACGGAGAGGAGGAAGGCTCCGGTGGATGGTTCAGAGGTGGCAGTGGATCACTTGGGTGAGCGATCCTTTGATCGCTTATGTCCAGAACGGGAGGATGCGTTGAATTAG 1254 0.5646 MTTCRETRSPTSILTSLSNSDRGLPLFLFLLLLLLLLHTSSPASAQDTTPPPPPAPPPLQPFARLRFNKSMGIIFVILVVVFFVIGFISVYSRQCTERRFRGGRDLANQIGGSSRGLDPEFIHAFPTFVYSSVKGLKIGRNTLECAVCLNEFQDNDTLRFIPKCNHVFHPDCIDLWLSSHSTCPVCRANLTPRPGDTSFVAVQIPDSALPPEPEEQDGGDDVIRLDHNNANRVGDSGSSPKDRDINIINLLNRNLSTNRSPAPRIRSTGFRFGSLFPRSDSTGHSLVSPGNDRERFTLRLPEEVRKELLSSTLKRTKSCGTLTSMRSERRGFRTRSVGGGGGGNYLQYEQSGCEGRLDRWGFSWTPPFVGRSGSSWSRKGSSTERRKAPVDGSEVAVDHLGERSFDRLCPEREDALN 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1111 417 CDD RING-H2_EL5-like 144 187 - -
Bisa05g1111 417 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 106 193 IPR013083 -
Bisa05g1111 417 MobiDBLite consensus disorder prediction 371 396 - -
Bisa05g1111 417 FunFam E3 ubiquitin-protein ligase ATL6 106 193 - -
Bisa05g1111 417 SMART ring_2 145 186 IPR001841 -
Bisa05g1111 417 ProSiteProfiles Zinc finger RING-type profile. 145 187 IPR001841 -
Bisa05g1111 417 PANTHER RING FINGER DOMAIN-CONTAINING 46 195 - -
Bisa05g1111 417 Pfam Ring finger domain 144 187 IPR001841 -
Bisa05g1111 417 SUPERFAMILY RING/U-box 139 195 - -
Bisa05g1111 417 MobiDBLite consensus disorder prediction 380 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1111 Bisa-ChrBisa05 19103345 19104598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1111 30 393 Rapid Response to Elicitors AT3G05200 35.829 1.07e-57 192
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g1111 05 19103345 19104598 Bisa09g0850 09 12322038 12324475 CCT
Bisa05g1111 05 19103345 19104598 Bisa05g1111 05 19103345 19104598 ECH