Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1109 ATGGCATTAGAGGCCGTGGTTTTCCCACAAGATCCATTCACCTATGGTTGCAGGGATTTGTACTCCTTGCTGGGAGGAGGTTGGAGCCTGCAAGACTATGGTTTAGAAGCAGAGCAAGAGAGCGCTTTCGCTGCGATCGCAAACAATAAGAGGGAGCAGACTTTTCATGCAAATTGGGATTATGCTTCTTCTTCTCCTTCGGTGATGCAAAATGGGAAGGACACGTGGGATTGCTCCAACTCTTCTCCTGAGGCCGGCACGGTTGAGCAGTCCCTCGCGGCTTCCTCGTCCGGACGCCGCAAACGACGTCGCACCAAGAGCGCCAAGAACAAGGAGGAAATCGAGAACCAGAGGATGACCCACATTGCGGTGGAGCGCAATCGCCGGAAACAGATGAACGAGTACCTCGCCGTGCTCCGATCCTTGATGCCTCCCTCTTATGTTCAAAGGGGTGATCAGGCCTCTATTATTGGGGGAGCCATTAACTTTGTGAAGGAGCTGGAACAGTTTCTGCTGTCGATGGAGGGTCAGAAGAGAACAAAGCAGGATGGATTCATTACGTCGCCGTTTGCTGAGTTCTTCACGTTCCCACAGTACACGACACGCGCGACACAGAGCAACGCTAGCTGTACGGCCACAAACGACACCGTGAGGGGACAGAACCAGAAGGACAACGAATCGGCGGTGGCCGACATAGAAGTGAGCTTGGTGGACAGCCATGCCAACCTCAAGATACTTTCGAAGAAAAGACCGGGCCAGCTTGTGAAGATGGTTCTTGGCCTTCAATCTCTCGGACTCTGCATTCTCCATCTTAACGTTACCGCCACTCTCCACGACATGGTCCTCTACTCCGTCAGTGTAAAGGTTGAAGAAGGGAGTCAGCTGAACACAGTGGAAGACATTGCAGCTGCGGTGAATCAATTACTGCGCAGAATACAAGAAGGAGCAATTCTTTGA 957 0.5214 MALEAVVFPQDPFTYGCRDLYSLLGGGWSLQDYGLEAEQESAFAAIANNKREQTFHANWDYASSSPSVMQNGKDTWDCSNSSPEAGTVEQSLAASSSGRRKRRRTKSAKNKEEIENQRMTHIAVERNRRKQMNEYLAVLRSLMPPSYVQRGDQASIIGGAINFVKELEQFLLSMEGQKRTKQDGFITSPFAEFFTFPQYTTRATQSNASCTATNDTVRGQNQKDNESAVADIEVSLVDSHANLKILSKKRPGQLVKMVLGLQSLGLCILHLNVTATLHDMVLYSVSVKVEEGSQLNTVEDIAAAVNQLLRRIQEGAIL 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1109 318 FunFam Basic helix-loop-helix transcription factor 107 182 - -
Bisa05g1109 318 Gene3D - 99 183 IPR036638 GO:0046983
Bisa05g1109 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 116 167 IPR011598 GO:0046983
Bisa05g1109 318 MobiDBLite consensus disorder prediction 70 113 - -
Bisa05g1109 318 ProSiteProfiles ACT domain profile. 242 318 IPR002912 -
Bisa05g1109 318 CDD bHLH_AtFAMA_like 119 190 - -
Bisa05g1109 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 116 181 IPR036638 GO:0046983
Bisa05g1109 318 Pfam Helix-loop-helix DNA-binding domain 117 168 IPR011598 GO:0046983
Bisa05g1109 318 SMART finulus 122 173 IPR011598 GO:0046983
Bisa05g1109 318 MobiDBLite consensus disorder prediction 70 95 - -
Bisa05g1109 318 PANTHER MAX DIMERIZATION, MAD 47 315 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1109 Bisa-ChrBisa05 19061172 19062321 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1109 1 289 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G72210 49.359 3.88e-76 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa05g1109 HLH 6.6e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g1109 05 19061172 19062321 Bisa09g1515 09 22453746 22454872 CCT
Bisa05g1109 05 19061172 19062321 Bisa05g1109 05 19061172 19062321 ECH