Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1108 ATGGGGAGAGCAATACACAGAAAACTCTTCCCAGCACTCTCAAGCATAAACCAAACCCAAGATTGCTCTGATTTCTGTGACCCTGCATGCCCCTATAACTGTTACTCTTTCCCTGATTACTACTTCCCTCCACCTCCACCTCCCCCCCCTCCTCTTTCACCACCTCAAGACTCCTCCTCAGGTACCCATATCCCCTCCTATTTCATCATCCTTGCTTCTTTATTCTCGGTCATTTTTGTTCTTCTTGGCTTGTACGTGATCAAAGTCAAATGTTGTGCTGACTGGTATGGCCGGAGACACAGTGTTGGATCCATATCAGACGCCTCTGACCAGGAGTTTCTTGAAGAGAACCAAGTTGATCACCCTATCTGGTTCATCACCACCGTGGGGTTACAACAGTCCGTTATAAATGCTATCACAGTTTGTAGGTATAAAAGGGGTGAAGGGTTGATAGAAGGAACTGAGTGTTCAGTGTGTTTGAACGGGTTCCATGAAGGTGAAACCTTGAGACTCTTGCCAAAGTGTAACCATGCCTTTCACATCCCCTGTATCGACACTTGGCTTCGTTCTCATACCAATTGTCCTCTCTGTCGTTCTGGTATCGTCTCTAATAACAGTGTCCCACCTGAAGCTGTCGTGTCAAATTTGGGTTCGGTGGAGCTAAACCCTTCGAACTCGCGAAGGCGTCAAGAGATTCAAACTGAGAATCCCACAAATGATGGTGAATTAAGCAGCAATATGGCGGTAATTGGCAATGAGGCAAACAGAACAGGAACAGGAGAAACCCAAGACTTCGCCGATGATTTGGTTCCAAAGGAGCACGAAAATGTTAAGAAGGAGCACGAAAATGTTAAGGTTTTCAATGATGAGACGCAAATTGAGATGAGGTCTATGTCCATGGATTCTAGGCTAGCTGGTAGTTCTTGTCCTGGTCCAGGTTTGGCAAATTCTTGTACTATGGAGTTTGAAGAAAACCCTCCAATGTTTAAAGCAATTAGTCGTTCCTCAGTTGCAGAATGTCTAAACATAAGCCCTGTCTCTATGAAGAGGTCATTATCTTGCAGTGGAAGGATTCAATCTGCGAGAGGTTACAGGACTCAGCGCATAAGTCTTCCCTATTAG 1122 0.4528 MGRAIHRKLFPALSSINQTQDCSDFCDPACPYNCYSFPDYYFPPPPPPPPPLSPPQDSSSGTHIPSYFIILASLFSVIFVLLGLYVIKVKCCADWYGRRHSVGSISDASDQEFLEENQVDHPIWFITTVGLQQSVINAITVCRYKRGEGLIEGTECSVCLNGFHEGETLRLLPKCNHAFHIPCIDTWLRSHTNCPLCRSGIVSNNSVPPEAVVSNLGSVELNPSNSRRRQEIQTENPTNDGELSSNMAVIGNEANRTGTGETQDFADDLVPKEHENVKKEHENVKVFNDETQIEMRSMSMDSRLAGSSCPGPGLANSCTMEFEENPPMFKAISRSSVAECLNISPVSMKRSLSCSGRIQSARGYRTQRISLPY 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1108 373 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Bisa05g1108 373 FunFam RING-H2 finger protein ATL54 131 204 - -
Bisa05g1108 373 SUPERFAMILY RING/U-box 150 207 - -
Bisa05g1108 373 MobiDBLite consensus disorder prediction 220 245 - -
Bisa05g1108 373 CDD RING-H2_EL5-like 155 198 - -
Bisa05g1108 373 PANTHER RING-H2 FINGER PROTEIN ATL16 47 338 IPR044600 GO:0016567|GO:0016740
Bisa05g1108 373 SMART ring_2 156 197 IPR001841 -
Bisa05g1108 373 Pfam Ring finger domain 155 198 IPR001841 -
Bisa05g1108 373 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 206 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1108 Bisa-ChrBisa05 19052440 19053561 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1108 1 243 C3H Transcription Factor Family AT1G72220 46.816 2.06e-66 214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g1108 05 19052440 19053561 Bisa05g1108 05 19052440 19053561 ECH