LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa05g1068	ATGGGAAGATCCCCCTGCTGCGATGAGAATGGCCTTAAGAAAGGGCCATGGACTCCTGAGGAAGATCAGAAGCTTGTCCAGTACATTCAGAAACATGGCCATGGAAGTTGGAGAGCTCTTCCCAAGCTAGCTGGCCTGAACAGATGTGGAAAAAGCTGTAGGCTAAGGTGGACCAATTATTTAAGGCCTGACATCAAAAGGGGCAAGTTTTCTCAAGAAGAAGAGCAAACCATATTGCATCTGCATTCCATACTTGGAAACAAATGGTCAGCAATTGCATCCCATCTTCCAGGCAGGACTGATAATGAGATAAAGAATTTCTGGAATACTCATCTAAAGAAGAAGTTGATTCAGATGGGTTTTGATCCAATGACCCACCAGCCAAGAACTGATCTTGTTTCCACCTTGCCATATCTGCTAGCTCTAGCCAACATGACAGACCTCATGAGTCATGACCACCATCATCAATATCAATCTCTGGATGATCAGGCTGTGAAAATACAAGCAGAGGCAGTTCAGTTGGCAAAGCTTCAATACCTTCACTCTTTACTCCAATCCACAACTTCCTTAAACACCACCAACTCCTATGACCAAAATGGCATCACAAACATGGAATCTATGAATGTGTTAAATTCAGTCTCTAATGTGAAAGAGAATCTTGTTATGAACTACCCTCAATTGGATAATCCAGGCTCATTTTCTCATGGAATAGCTAGCTCCCAACCACTCCACCACCCAAACATGTTATCTCACATGCCAGACCCACAAGTCCCTTTCACCTCCCAATCATGTTTGAATAGTGAGCAGGGTCAAGGTACTAACTTTACAATGATAAGTCAAGGGGATCACACAGGAGCTGATCACGACTCTTCATGGATATTACCATCCATTGATCCCCCAACTATTACAGGAGATGCAAGCAGCAGCTCTTCTAGCTATGGAGGGAGATCCTCATCTTATTGGCCCGAGTTATTTTTCGAGGATCCCATTATGCATGAGCTATCTTAG	1008	0.4365	MGRSPCCDENGLKKGPWTPEEDQKLVQYIQKHGHGSWRALPKLAGLNRCGKSCRLRWTNYLRPDIKRGKFSQEEEQTILHLHSILGNKWSAIASHLPGRTDNEIKNFWNTHLKKKLIQMGFDPMTHQPRTDLVSTLPYLLALANMTDLMSHDHHHQYQSLDDQAVKIQAEAVQLAKLQYLHSLLQSTTSLNTTNSYDQNGITNMESMNVLNSVSNVKENLVMNYPQLDNPGSFSHGIASSQPLHHPNMLSHMPDPQVPFTSQSCLNSEQGQGTNFTMISQGDHTGADHDSSWILPSIDPPTITGDASSSSSSYGGRSSSYWPELFFEDPIMHELS	335

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa05g1068	335	CDD	SANT	69	112	IPR001005	-
	Bisa05g1068	335	FunFam	MYB-related transcription factor	13	66	-	-
	Bisa05g1068	335	CDD	SANT	16	61	IPR001005	-
	Bisa05g1068	335	Gene3D	-	13	66	-	-
	Bisa05g1068	335	FunFam	Transcription factor MYB39	69	130	-	-
	Bisa05g1068	335	MobiDBLite	consensus disorder prediction	271	286	-	-
	Bisa05g1068	335	MobiDBLite	consensus disorder prediction	271	318	-	-
	Bisa05g1068	335	MobiDBLite	consensus disorder prediction	301	318	-	-
	Bisa05g1068	335	Gene3D	-	69	116	-	-
	Bisa05g1068	335	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	61	IPR017930	-
	Bisa05g1068	335	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Bisa05g1068	335	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	246	-	-
	Bisa05g1068	335	SMART	sant	66	114	IPR001005	-
	Bisa05g1068	335	SMART	sant	13	63	IPR001005	-
	Bisa05g1068	335	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Bisa05g1068	335	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Bisa05g1068	335	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Bisa05g1068	335	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	62	116	IPR017930	-
	Bisa05g1068	335	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa05g1068	Bisa-ChrBisa05	18410697	18411972	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa05g1068	1	335	MYB Transcription Factor Family	AT1G34670	54.667	4.05e-121	351

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bisa05g1068		Myb_DNA-binding	1.3e-17	CL0123