Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1034 ATGGGTCGTGTTAAATTGGAGATTAAGAGGATAGAGAACACAATAAATCGTCAGGTCACTTTCTCAAAGCGCAGAAATGGTTTGATTAAAAAGGCCTACGAGTTATCCATTCTTTGTGACATTGATATTGCTCTCATCATGTTTTCGCCATCGCAACGTGTCAGTCACTTTTCCGGCAGACAAAGGATCGAGGATGTTTTTACTCGTTATATTAACCTACCCGACCAAGAAAGAGATAGCGCTGTAACCTTTCCAGAAGCAGCCTACCGCAGGAATATCCAGAACAAAGAGGAATATCTGCTAAGCAACCATCTATCTTCATACGATCCATCTGCAATACAGGGGATGCCGACTTCTTTCGAGAATGTAAGTTGGTTGCAAGATGGTGGTCAGAACCATGCCCACATTTTTGACGCCTCTGTTACTTTGGATCCGCTCAGGGATTTGTCGTCGGCGGTTTATGATCCATTTTCACAAGGGACAAGTTCAAATGCCGACCCGCGAAGTATAGGAGAGTGCCACGTGGGAAATCCAACGGATGGAAACCTTCAAGCATGGCCTCAAGGATACACATTGTATCCTCCTATGCAGCATGAAATGGTGGGACCAGACATGCAAGAAATGATGCCACATGGGCAGATGAACATCCCAATGAACGGCTCACACTCGCACTCGCACGTGCAAGTGCAACCACAGAGCAATGAAGGAGGAGATCAGTATGACCAGTGA 729 0.4582 MGRVKLEIKRIENTINRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSQRVSHFSGRQRIEDVFTRYINLPDQERDSAVTFPEAAYRRNIQNKEEYLLSNHLSSYDPSAIQGMPTSFENVSWLQDGGQNHAHIFDASVTLDPLRDLSSAVYDPFSQGTSSNADPRSIGECHVGNPTDGNLQAWPQGYTLYPPMQHEMVGPDMQEMMPHGQMNIPMNGSHSHSHVQVQPQSNEGGDQYDQ 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1034 242 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa05g1034 242 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 153 - -
Bisa05g1034 242 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa05g1034 242 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa05g1034 242 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa05g1034 242 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa05g1034 242 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa05g1034 242 FunFam MADS-box transcription factor 41 13 92 - -
Bisa05g1034 242 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa05g1034 242 MobiDBLite consensus disorder prediction 216 242 - -
Bisa05g1034 242 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Bisa05g1034 242 MobiDBLite consensus disorder prediction 157 181 - -
Bisa05g1034 242 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
Bisa05g1034 242 MobiDBLite consensus disorder prediction 214 242 - -
Bisa05g1034 242 SUPERFAMILY SRF-like 2 80 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1034 Bisa-ChrBisa05 17669648 17673214 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1034 10 217 Type I MADS-box Gene Family AT1G22130 33.068 1.27e-23 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Bisa05g1034 SRF-TF 9.5e-25 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g1034 05 17669648 17673214 Bisa05g1034 05 17669648 17673214 ECH