Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1012 ATGCCGCCGCCACCACCACTGCAATTACCGCCGCAGCCTCGTCGTCTCCAACCGAAAATTTGGCGGGCATGCGCCGGCACATCTGTTCAAATCCCTACTGTGCATTCTAGGGTTTATTACTTCCCTCAAGGCCACTTGGAGCAAGCCTCCTCGACTCCTTCACGCCTCTCCCCTCTTCTTCTATCCAGGCCCTACATTCTCTGTCGCCTATCTGCTGTTCAGTTCCTTGCTGATCCTGTCACCGATGAGGTCTTTGCGAAGCTTCTCCTTTATCCTCTCAGTGACTTCTCCGCTACTCGCGACCAGCTTCATCCCGTCGGCGATTCCGCAGAAGCAGCGGGCGACGACAAAGTCGGGTCGTTTGCCAAAATTCTGACACCTTCTGATGCCAACAATGGCGGTGGATTCTCCGTCCCGAGGTTCTGTGCTGATTCGATCTTTCCGCCGCTGAATTTCAATTCCGACCGGCCGAACCAGACACTGTCCATTACTGACGTTCAGGGCATCGTCTGGGATTTTCGCCACATCTATCGAGGCACGCCCAGGCGGCACTTGCTCACTACTGGATGGAGTAAGTTTGTCAATCACAAGAAGTTGATTGCCGGTGATTCCGTGGTTTTCATGAAGAACTCAATGGGGGAGATGTTCGTTGGGATTCGCAGAGCTGTGCGACTCAGTGCAGGAAATAGCAGCGATTGCGTCAGAAGGTTCTCCGAGATCGGTGGCATGAGAACTAATGTAGATGAGGATGAGCAGGAACAGCGCTATACTGGTGTTAGAGAATTTTCGAGGAACGGGAAGGGGAAGTTGCCTACTAAGGCAGTTGTAGAGGCTGCAGAATCGGCGGCACAAAATATGCCGTTCGAAGTTGTGTATTATCCAAGGGCGGGGTGGTCGGACTTTGTGTTGAAGGCAGAGGTAGTGGAGGAAGCACTGAAAGTTGTATGGACTCCTGGAATGAGAGTCAAAATGTCTATGGAGACAGAGGATTCGTCCAGGATGACCTGGTTTCAGGGGACAGTCTCTTCGGCATCTGCTCCTCGTGATAGTGGGCATTGGCGGGGTTCTCCTTGGCGTACGCTTCAGATTACATGGGATGAACCTGAAGTCTTGCCTAATGCAAAGCGAGTCAGCCCTTGGCAAGTTGAACATATTTCATCCTCACCTCTGCTTCATACACCATTTCCCCCGGTAAAAAAGTTTAGAGCTGCTCAGTATCCTGGGGTGTCAATTGAGGAAAACTCCTTCTTCAGTATGACCAGATTCACTAATTCAACAGTGGGACACATGAGTCAATCATTGTTGAATTGTGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATTTATTTTCTGTCTCAAGTTTTTCAAACTTCTTAAGTGATAATACTCAGCTTTGTACTGCTAGTTCCTTTGAGAACAACACAGTGCCAAGGTTAAAAACTGTGTCAACAGATCTAAACATAGGCAGTTCTCTATCTGACAACTTGTCACCAAATAGCCAGAGTAGTGTTCATTCCATTGGCACAGAATTTGTTGGGACCAATTGCTGCAACTCAACAAAACTTGGTGTTGGTTCATTTCAGCTATTTGGTAAGATGATTCAAATGAATCAGCCTGTTGAAAGTGGTTTACATGGTTCTGATTGCGCTGGAGATGATGGTAATAAGTGTTGCAATGATACTGAAGGCATTGATAACCCACTGGATCATTCCAATTACTCAAAATTGGTCAATGGGCTTGATGTTCAATGCCAAAAAGCAGCGCCAGTTGAGGCATGTTATTTGTGA 1794 0.4816 MPPPPPLQLPPQPRRLQPKIWRACAGTSVQIPTVHSRVYYFPQGHLEQASSTPSRLSPLLLSRPYILCRLSAVQFLADPVTDEVFAKLLLYPLSDFSATRDQLHPVGDSAEAAGDDKVGSFAKILTPSDANNGGGFSVPRFCADSIFPPLNFNSDRPNQTLSITDVQGIVWDFRHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFMKNSMGEMFVGIRRAVRLSAGNSSDCVRRFSEIGGMRTNVDEDEQEQRYTGVREFSRNGKGKLPTKAVVEAAESAAQNMPFEVVYYPRAGWSDFVLKAEVVEEALKVVWTPGMRVKMSMETEDSSRMTWFQGTVSSASAPRDSGHWRGSPWRTLQITWDEPEVLPNAKRVSPWQVEHISSSPLLHTPFPPVKKFRAAQYPGVSIEENSFFSMTRFTNSTVGHMSQSLLNCDTFPAGMQGARHDLFSVSSFSNFLSDNTQLCTASSFENNTVPRLKTVSTDLNIGSSLSDNLSPNSQSSVHSIGTEFVGTNCCNSTKLGVGSFQLFGKMIQMNQPVESGLHGSDCAGDDGNKCCNDTEGIDNPLDHSNYSKLVNGLDVQCQKAAPVEACYL 597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1012 597 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 547 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bisa05g1012 597 Pfam Auxin response factor 278 362 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bisa05g1012 597 SUPERFAMILY DNA-binding pseudobarrel domain 116 237 IPR015300 -
Bisa05g1012 597 Gene3D - 118 223 IPR015300 -
Bisa05g1012 597 SMART B3_2 121 223 IPR003340 GO:0003677
Bisa05g1012 597 Gene3D - 316 389 - -
Bisa05g1012 597 CDD B3_DNA 120 221 IPR003340 GO:0003677
Bisa05g1012 597 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Bisa05g1012 597 FunFam Auxin response factor 119 223 - -
Bisa05g1012 597 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1012 Bisa-ChrBisa05 17316664 17320733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1012 14 564 B3 DNA Binding Superfamily AT1G77850 50.000 5.92e-177 512
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bisa05g1012 B3 4.8e-22 CL0405