Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g1011 ATGTCTCTGCCACCGTCACGGCAACAACCGCCGCAGCCTCGCTGTCTCCACCCGAAAATTTGGCGAGCATGCGCCGGTGCGTCTGTTCAAATCCCTACTCTGCATTCTAGGGTTTACTACTTCCCTCAAGGCCATTTGGAGCAAGCCTCCTCGTCTCCTCCATACCTCTCCCCTCTTCTTCTCTCCAGGCCATTCATTCCCTGTCGCATCTCTGCTGTTGACTTCCTTGCTGATCCTCTCACCGATGAAGTCTTTGCTAAGCTTCGCCTCCATCCGCTCAATGATTTCGCCGCAACTCGAGGCCACCTTCATCCCAACGGCGATTATGGGGAAGCACCGGGTGATGACAAGGTCGTGTCGTTTGCCAAGATTCTGACGCCTTCTGATGCCAACAATGGCGGTGGATTCTCTGTTCCGAGGTTCTGTGCTGAGTCCATCTTGCCCCCGCTGAACTTTCAGTCCGACCGGCCGAACCAGACATTGTCCGTCACTGACGTTCACGGCGTCGTTTGGGAATTTTGCCACATCTATCGAGGCACGCCTAGGCGGCACTTACTCACTACTGGATGGAGCAAGTTTGTCAATCATAAAAAATTAATTGCCGGTGATTCTGTAGTTTTCATGAAGAACTCCAGTGGCGAGATTTTCGTTGGTATTCGCAGAGCTGAGCGATCCACTGCAGTAAATGGTAGTGATTACGCCAGAAGGTTCGCCGAGATCGGTGGCGTGAGAAACAAGGTTGAGGTTGAGCAGCAGGAAGTACGCTATTATGGTTTGGGAGAATTTTCGAGGAACGGGATGGGCAAGTTGCCTGCTAAGGCAGTTGTAGACGCTGCAGAATCGGCAGCACAAAATCTGCTGTTTGAGGTTGTCTATTATCCAAGGGGAGGTTGGTCGGACTTTGTGTTGAAGGCAGAGGTTGTGGAGGAAGCACTGAAAGTCGTATGGACTCCCGGCATGAGAGTTAAAATGGCTATGGAGACAGAGGATTCGTCCAGGATGACTTGGTTTCAGGGGACAGTTTTTACGACATCTGCTCCGGATAATGGGCTTTGGCGGGGTTCTCCTTGGCGTATGCTTCAGATTACATGGGATGAACCTGAAGTCTTGCAGAATGCAAAGCGAGTCAGCCCTTGGCAGGTTGAACATATTTCCCCCACACCTCTGCGTCAAGCAACATTTCCCCCTTCAAAAAAGTTTAGAGCTGCTCAGTACACGGGGGTGACAATTGATAGAGGGGAAGACTACTTTACTATGACAAGATTCACTAATTCCGCAATGGGACTCTTGAATCAATCATTGTTGAATTATGATACCTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGTTTCAAACTTTTCCAACTTTCTCAGTAATAATACTCATCTATGTACTGCCAGTTCCTTTGGGAACAACACAATGCCAAAGTTGAAAACTGTGGCAACTGATCTAAACATAGGGAGTTCTCAATCTGGCAACTTGTCACCAGATAGCCAGAGTAGTTTTAATTCCTCTGACACAGAATTTGCCGGGACCCATTGCTGGAACTCAACAAAAGTTGGCGCTGGTTCATTTCTACTATTTGGTAAGATGATTCGAATGAATCAGCCTGTTGAAAATGGTTTGCATAGTGCTGATTGTACTGGAGATGACGGTAATAAGGGTTGCAATGAATCTGAAATGATTGACAACACACTGGATCATTCGACTTACTCAAAATTGCTCAACAGGCTTGATATCCAATGCTGA 1761 0.481 MSLPPSRQQPPQPRCLHPKIWRACAGASVQIPTLHSRVYYFPQGHLEQASSSPPYLSPLLLSRPFIPCRISAVDFLADPLTDEVFAKLRLHPLNDFAATRGHLHPNGDYGEAPGDDKVVSFAKILTPSDANNGGGFSVPRFCAESILPPLNFQSDRPNQTLSVTDVHGVVWEFCHIYRGTPRRHLLTTGWSKFVNHKKLIAGDSVVFMKNSSGEIFVGIRRAERSTAVNGSDYARRFAEIGGVRNKVEVEQQEVRYYGLGEFSRNGMGKLPAKAVVDAAESAAQNLLFEVVYYPRGGWSDFVLKAEVVEEALKVVWTPGMRVKMAMETEDSSRMTWFQGTVFTTSAPDNGLWRGSPWRMLQITWDEPEVLQNAKRVSPWQVEHISPTPLRQATFPPSKKFRAAQYTGVTIDRGEDYFTMTRFTNSAMGLLNQSLLNYDTFPAGMQGARHDLFSVSNFSNFLSNNTHLCTASSFGNNTMPKLKTVATDLNIGSSQSGNLSPDSQSSFNSSDTEFAGTHCWNSTKVGAGSFLLFGKMIRMNQPVENGLHSADCTGDDGNKGCNESEMIDNTLDHSTYSKLLNRLDIQC 586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g1011 586 SUPERFAMILY DNA-binding pseudobarrel domain 114 237 IPR015300 -
Bisa05g1011 586 Pfam B3 DNA binding domain 121 222 IPR003340 GO:0003677
Bisa05g1011 586 FunFam Auxin response factor 119 223 - -
Bisa05g1011 586 ProSiteProfiles B3 DNA-binding domain profile. 121 223 IPR003340 GO:0003677
Bisa05g1011 586 SMART B3_2 121 223 IPR003340 GO:0003677
Bisa05g1011 586 Pfam Auxin response factor 278 361 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bisa05g1011 586 CDD B3_DNA 120 221 IPR003340 GO:0003677
Bisa05g1011 586 Gene3D - 316 387 - -
Bisa05g1011 586 Gene3D - 118 222 IPR015300 -
Bisa05g1011 586 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 14 560 IPR044835 GO:0003677|GO:0006355|GO:0009725
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g1011 Bisa-ChrBisa05 17295990 17300106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g1011 14 564 B3 DNA Binding Superfamily AT1G77850 50.270 1.74e-171 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bisa05g1011 B3 1.9e-22 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g1011 05 17295990 17300106 Bisa09g1605 09 23967772 23971077 CCT
Bisa05g1011 05 17295990 17300106 Bisa05g1011 05 17295990 17300106 ECH