Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0983 ATGGCTGACGCTGTGAGATCTACGGGCACTGTCAAGTGGTTCAATGCGTACAAGGGTTTCGGATTCATAGCCCCTGACAATGGTGGTGAGGATCTCTTCGTTCATCATACTTCCATCCGATCCGATGGCTACCGAACCCTAGCGGAGGGTCAGGCGGTGGAGTTTGTTGTGGATTACGGCGAGGATGGGCGGACCAAAGCTGTCGATGTCATTGCTCAGGCGAGATCTCGCCGTTTTGCCATTGGTCGTGGCGGTAGTGGGAGAGGGTTTTCTGGCGGGAGAGGCAGAGGAAGTGGATATGGCGGGTACGGAGGATACTACGGCGGCGGGGATGGTCGTGATGACGGTTCTGGGTATGGTAGAAGCGGAGGGATTGGGCGGAGAGGTGGGGGAGGCAGATACGGTGGGGGCAGATACGATGGTAGAAGATATGAATACGATGGAGGCAGATACGATGGTGGTAGATACGATGGAGGCAGATACGACGGAGGTCCTGAGTGTTATAATTGTGGCCGAATGGGTCATTTGGCGAGAGACTGTTATCAGGGTGCTAGTGGTGGATCTCGGAGACGCGGCGGCGGTAATGGCGGCGGCGGCGGTGGAGGTGGAGGAGGAGGGTGTTTTAACTGCGGGAAGGAAGGACATTTTGCGAGGGAATGTCCCAATATTGGAAAATGA 678 0.5575 MADAVRSTGTVKWFNAYKGFGFIAPDNGGEDLFVHHTSIRSDGYRTLAEGQAVEFVVDYGEDGRTKAVDVIAQARSRRFAIGRGGSGRGFSGGRGRGSGYGGYGGYYGGGDGRDDGSGYGRSGGIGRRGGGGRYGGGRYDGRRYEYDGGRYDGGRYDGGRYDGGPECYNCGRMGHLARDCYQGASGGSRRRGGGNGGGGGGGGGGGCFNCGKEGHFARECPNIGK 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0983 225 Pfam Zinc knuckle 206 222 IPR001878 GO:0003676|GO:0008270
Bisa05g0983 225 Pfam Zinc knuckle 166 180 IPR001878 GO:0003676|GO:0008270
Bisa05g0983 225 Pfam 'Cold-shock' DNA-binding domain 8 71 IPR002059 GO:0003676
Bisa05g0983 225 Gene3D - 1 70 IPR012340 -
Bisa05g0983 225 ProSiteProfiles Zinc finger CCHC-type profile. 207 222 IPR001878 GO:0003676|GO:0008270
Bisa05g0983 225 Gene3D - 157 192 - -
Bisa05g0983 225 Gene3D - 203 225 - -
Bisa05g0983 225 SUPERFAMILY Retrovirus zinc finger-like domains 159 222 IPR036875 GO:0003676|GO:0008270
Bisa05g0983 225 PANTHER COLD SHOCK DOMAIN PROTEIN 2 123 222 - -
Bisa05g0983 225 SMART csp_8 8 73 IPR011129 GO:0003676
Bisa05g0983 225 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Bisa05g0983 225 CDD CSP_CDS 8 70 IPR002059 GO:0003676
Bisa05g0983 225 ProSitePatterns Cold-shock (CSD) domain signature. 20 39 IPR019844 -
Bisa05g0983 225 PRINTS Cold shock protein signature 9 24 IPR002059 GO:0003676
Bisa05g0983 225 PRINTS Cold shock protein signature 30 39 IPR002059 GO:0003676
Bisa05g0983 225 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Bisa05g0983 225 SMART c2hcfinal6 206 222 IPR001878 GO:0003676|GO:0008270
Bisa05g0983 225 SMART c2hcfinal6 166 182 IPR001878 GO:0003676|GO:0008270
Bisa05g0983 225 ProSiteProfiles Zinc finger CCHC-type profile. 167 180 IPR001878 GO:0003676|GO:0008270
Bisa05g0983 225 ProSiteProfiles Cold-shock (CSD) domain profile. 6 72 IPR002059 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0983 Bisa-ChrBisa05 16825757 16826434 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Bisa05g0983 CSD 1e-23 CL0021