Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0969 ATGACTTTCCCCGGACACAATCCCAGCTTCAAAACAGAATCACTTCATGCAAACCCAGAAGTCATTCTTCCTCTACATTTATATATGTCCCCCCATCCGTCAATTTCAACCACAGATTCTCTGAAACTCGCATTAATTCCAAACTCATTTCAATTCTTTGATCTCTCGACCTTAAAGATTATGTCTTTGAGCCCTCCTCGCGCAAGGACGAATGCCCAACCCAGAAGAACCTACCAGCTCTACTGGTGCTTCCGATGTAATCGGACGGTCAGGCTCGCCCCCTCAGGCCCCTCCGACATTATCTGCCCTCGATGCTTTGAGCAGTTCCTCTGTGAAATAAACATAACAACACCTAGACTCTTTCTTGACTTCACCGATCCAGACCCTTCCCCTCAAGGGCGTTTGCTCGAAGCACTTTCTCTCATGCTTGAACCACCAGTCCGGTCATCCCACAACCGCTTCTCTGACCCTGAATACGATTACCAACGCTTTCGATCGATTCAGCGGCGACCCCACCAACAGGAAGGTCGACATCGTGAGAACCCAGATGCTGAAATCCCTGTTCGTCACATAAGACGTCCCCGACATCGTAGTTTCGATGCCGGTGCTAGTAGTTTCAACCCAGAACCAGAAACCCAGCCTCGTTCTCGGACTTGGATTATTGTTCGGCCAGTGGATCGCTCTAACTCTTTCGAACGGATTCCACGGCGGCAGAATTCAATCCCACCACGGGTTGATCCGAGAGACTACTTTTTCGGGCCGGGTCTGAACGAACTGATTGCTCAATTGACGGAAAATGACAGGCAAGGTCCGGCGCCCGCGCCGGACAGAGCTATCAATGCGATTCCGACGGTGAAAGTACTGGAGACTCATTTGAAAGAGAACACTCATTGTCCGGTTTGCCAGGAGGAGTTCGAAGTGGGTGGGCAGGCGAGGGAGCTACCATGCAAGCATATATACCATTCCGATTGCATTGTTCCATGGCTGAGGCTTCACAATTCTTGCCCTGTTTGCCGGCACGAGGTGCCCGTCTGTTCTGACTCCGATGAGTCTGATGACAGCGGAAGAGGCGCGTCTCGGAGGTGCTTGAGGTGGAGACAGCTGGCTTCTCTTTGGCCTTTCCCTGGAAGGTTTCGCCGGGTTAATCCAGAAAGATAG 1158 0.5138 MTFPGHNPSFKTESLHANPEVILPLHLYMSPHPSISTTDSLKLALIPNSFQFFDLSTLKIMSLSPPRARTNAQPRRTYQLYWCFRCNRTVRLAPSGPSDIICPRCFEQFLCEINITTPRLFLDFTDPDPSPQGRLLEALSLMLEPPVRSSHNRFSDPEYDYQRFRSIQRRPHQQEGRHRENPDAEIPVRHIRRPRHRSFDAGASSFNPEPETQPRSRTWIIVRPVDRSNSFERIPRRQNSIPPRVDPRDYFFGPGLNELIAQLTENDRQGPAPAPDRAINAIPTVKVLETHLKENTHCPVCQEEFEVGGQARELPCKHIYHSDCIVPWLRLHNSCPVCRHEVPVCSDSDESDDSGRGASRRCLRWRQLASLWPFPGRFRRVNPER 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0969 385 Pfam Ring finger domain 297 339 IPR001841 -
Bisa05g0969 385 Pfam zinc-ribbon 79 113 IPR039525 GO:0061630
Bisa05g0969 385 CDD RING-H2_RNF126-like 298 339 - -
Bisa05g0969 385 FunFam E3 ubiquitin-protein ligase RING1-like 261 345 - -
Bisa05g0969 385 ProSiteProfiles Zinc finger RING-type profile. 298 339 IPR001841 -
Bisa05g0969 385 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 261 345 IPR013083 -
Bisa05g0969 385 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 171 343 - -
Bisa05g0969 385 SMART ring_2 298 338 IPR001841 -
Bisa05g0969 385 SUPERFAMILY RING/U-box 278 344 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0969 Bisa-ChrBisa05 16648303 16649460 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0969 257 374 C3H Transcription Factor Family AT1G68180 40.496 6.17e-24 97.4