Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0892 ATGTTAATTGATGATGGACCAAACAATGCCAATAACACAGAAGGTGCTGGTGGAGCTCAGCGCTTGAAAATTGAAGCTATAAATAATGGGGTGCCAATTGCAAATGGGAATTATGTTACTGAAGGGGACTCTGGTGGGGTTGAATGTATTCGAACATACAAGAGGCGTAAGCATGTAAAGTTGAGTTCAGAAAGCAAAGTTCAAGAAGATTGCAGAGCATATGTGGAAGTTGCATGTCATTTAGCTGTCCAGAAAGCTCGTAAAATTGACAAAGATGGACAAGAATGCTCTTTGCAATTGGGGTGGATGTCTCAGAGATTACAGAATGAAGTTAATGGGCATACAGATGGCTTGTGTAACGGATGTTCTAGTTCTAGCATCTCGGATGGACATGATGTGACTGAGATGTGTCAGAATGTACTCTGTAACATAGTTGCCTCTGAAAATTTCAGTTCATTATGCAAGGTATTAACTGAAAACTTTCAAGGAACGGAGCCTGAAAGTGTCCTTGACTTTAGCATCATAAACTCAAGGATGAAGGAGCGGGCTTATGAACAGTCGCCAAAACTTTTCTTGTCAGATATTCAACAGATGTGGAGAAAGCTTCAAGACACTGGTAATAAGATTGTTTCTCTAGTGAAGAGTCTCTCCAGCATGTCAAGAACTTCCTACTGTGGGCAGGTGGGAGTTTCAGGGCATAGCACATTTGAAGATGAAATGAAAGAGTTAGAATCTGACTTTCACATGAAACCAGAGAAGACAGAAGACAGTGGTATGCATAAAATTTGCACTTGCAGGCGTTGTGGAGACAAGGCAAACGGGATAGACTGTTTGGTTTGTGATTCATGTGAGGAGATGTTCCATGTCTCATGTATTGAGCCAGCTGTTAAAGTGATACCCCATAAAAGTTGGTACTGTGCCAATTGCGCTGCTAGTGGAATTGGATCTCCAGATGAGAATTGTGTGGTATGTGAAAGATTGAATGTCCAGAAGACACTGTACAGCACAGCTGGTGATGAAAGCTTACCTACCGATGAGGGAACACTTAATGAATTGGAAGAGAATTCAAATTGTACCTATGGTGGGGTTCAAGTACCCAGAGGTGGGAAAAACAACTCTATTTGCAAAATTTGTGGTAATGAGGTCGATGGTGAATATAAAAAAATTTGTGGTCACTCCTGCTGCCCCAATAAATTTTACCATTTAAGGTGTTTGACAAGTAAGCAGCTGAAGTCATATGGTCCCTGTTGGTTCTGCCCTTCTTGTTTATGCCAATTTTGCCTCACTGATAGAGATGATGATCAGATTGTTCTCTGTGATGGCTGTGATCATGCATATCACATCTACTGCATGCAACCTCCGCGAACTTCCATACCAAAAGGGAAATGGTTCTGCAGAAAATGTAATGCAGGAATCCAAGCCATACGCCGGGCAAAGAAGGCATATGAAAGTAACATTCTCAGAAGAACAGGTCAAAATGGTTCAAAGCCAACTGGAAATTTCAAAAAGATATGGGATGTTGAGTATGGACGGGAATTGGAGAAAAGTGAAGGAATGGACATGCTTTTAACTGCTGCCAAAACTCTGAATAATGAAGATACGAAAACTACGGGTTCTGAAGAGAACTCGGCTGCAATTGAGATTCAATAA 1650 0.4121 MLIDDGPNNANNTEGAGGAQRLKIEAINNGVPIANGNYVTEGDSGGVECIRTYKRRKHVKLSSESKVQEDCRAYVEVACHLAVQKARKIDKDGQECSLQLGWMSQRLQNEVNGHTDGLCNGCSSSSISDGHDVTEMCQNVLCNIVASENFSSLCKVLTENFQGTEPESVLDFSIINSRMKERAYEQSPKLFLSDIQQMWRKLQDTGNKIVSLVKSLSSMSRTSYCGQVGVSGHSTFEDEMKELESDFHMKPEKTEDSGMHKICTCRRCGDKANGIDCLVCDSCEEMFHVSCIEPAVKVIPHKSWYCANCAASGIGSPDENCVVCERLNVQKTLYSTAGDESLPTDEGTLNELEENSNCTYGGVQVPRGGKNNSICKICGNEVDGEYKKICGHSCCPNKFYHLRCLTSKQLKSYGPCWFCPSCLCQFCLTDRDDDQIVLCDGCDHAYHIYCMQPPRTSIPKGKWFCRKCNAGIQAIRRAKKAYESNILRRTGQNGSKPTGNFKKIWDVEYGRELEKSEGMDMLLTAAKTLNNEDTKTTGSEENSAAIEIQ 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0892 549 Gene3D - 157 312 - -
Bisa05g0892 549 ProSiteProfiles Zinc finger PHD-type profile. 421 471 IPR019787 -
Bisa05g0892 549 ProSiteProfiles Zinc finger PHD-type profile. 262 312 IPR019787 -
Bisa05g0892 549 SMART PHD_3 264 310 IPR001965 -
Bisa05g0892 549 SMART PHD_3 374 423 IPR001965 -
Bisa05g0892 549 SMART PHD_3 426 469 IPR001965 -
Bisa05g0892 549 SUPERFAMILY FYVE/PHD zinc finger 423 476 IPR011011 -
Bisa05g0892 549 Pfam PHD-finger 424 469 IPR019787 -
Bisa05g0892 549 SUPERFAMILY FYVE/PHD zinc finger 256 310 IPR011011 -
Bisa05g0892 549 FunFam PHD finger protein EHD3 isoform A 155 313 - -
Bisa05g0892 549 ProSitePatterns Zinc finger PHD-type signature. 263 309 IPR019786 -
Bisa05g0892 549 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 367 474 IPR013083 -
Bisa05g0892 549 PANTHER OS02G0192300 PROTEIN 170 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0892 Bisa-ChrBisa05 15368417 15372840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0892 423 492 C2H2 Transcription Factor Family AT3G01460 45.833 1.06e-13 72.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Bisa05g0892 PHD 2.9e-13 CL0390
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g0892 05 15368417 15372840 Bisa09g1732 09 26056487 26062978 CCT
Bisa05g0892 05 15368417 15372840 Bisa05g0892 05 15368417 15372840 ECH