Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0813 ATGCAATCAAACGGCTCTGATGATTCCAAACAACCGGAGCAGAATCAACGGCAACAGCAAACGCATACGCCGCCGCAGCCGCTGCCACTGCCCCGCCAGTGGATACCTATGCAGTATCCAGCGGCGGCTATGGTAATGCAGCATCACATGTTGCCGCCTCATCATTACGCGCCGCCGCCGCCACAGCCATATATGCCTTACCACCAGTACCAGCAGCTGCATTACCAGCATGTATCTCACACGCAGCAGCGTCAGCATCAGGGATCCAGCGGTGAAAACAAGACGATCTGGGTCGGCGATTTGCATCACTGGATGGACGAAAATTATCTCCATCGCTGCTTCGCTGCCACGGGCGAGATTACCTCCATTAAGGTTATTCGCAATAAGCAGACTGGGCTATCAGAGGGTTATGGGTTTGTGGAATTCTATTCGCATGGCACAGCAGAGAAAGTATTACAGGAATATGCTGGCATGCGGATGCCCAATACAGAGCAACCTTTTCGCCTGAACTGGGCAACATTTAGCACGGGAGACAAGCGTTCGGATAATGCTCCCGATCTGTCTATATTTGTAGGAGACTTAGCTGCAGATGTTACTGATAGCATGTTGCATGAAACTTTTGCTAGTAGATATCCTTCTGTTAAAGCTGCAAAAGTTGTCTTTGATGCCAATACTGGCCGCTCAAAGGGATATGGTTTCGTCAGGTTTGGAGATGACAATGAGAGGTCACAGGCTATGACTGAAATGAATGGTGTTTATTGTTCTAGCAGGCCTATGCGTGTTGGTGCTGCAACTCCAAGGAAATCATCAGGAGGCCATATGTCAAATGGCACATCCGGCCAAACTGAAGTAGATTCAGCAAACACAACTATATTTGTTGGAGGACTCGACCCTAATGTTACAGATGATGATCTTAGGCAGCCATTTTCTCAGTATGGGGAGATAGTCTCTGTCAAGATTCCTGTGGGAAAAGGATGTGGATTTGTACAATTTGCAAACAGAAATAATGCTGAAGAGGCGTTGCAGAAACTAAATGGGATAACAATTGGCAAGCAAATAGTTCGTCTTTCTTGGGGCCGCAATCCAGCAAATAAGCAGTTTCGAATGGATATCGGGAGCCCCTGGAATGGGGGATACTATGGAGGCTCCGTTTATGATGGATATGGATATGCTCTGCCTCCTCATCACGACCCAAGCATATATGCTGCTGCTGCATATGGGGCATACCCCGTGTATGGGGGCCATCAACAGCAAGTAAGCTGA 1263 0.4822 MQSNGSDDSKQPEQNQRQQQTHTPPQPLPLPRQWIPMQYPAAAMVMQHHMLPPHHYAPPPPQPYMPYHQYQQLHYQHVSHTQQRQHQGSSGENKTIWVGDLHHWMDENYLHRCFAATGEITSIKVIRNKQTGLSEGYGFVEFYSHGTAEKVLQEYAGMRMPNTEQPFRLNWATFSTGDKRSDNAPDLSIFVGDLAADVTDSMLHETFASRYPSVKAAKVVFDANTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRVGAATPRKSSGGHMSNGTSGQTEVDSANTTIFVGGLDPNVTDDDLRQPFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGITIGKQIVRLSWGRNPANKQFRMDIGSPWNGGYYGGSVYDGYGYALPPHHDPSIYAAAAYGAYPVYGGHQQQVS 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0813 420 MobiDBLite consensus disorder prediction 262 283 - -
Bisa05g0813 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 187 266 IPR000504 GO:0003723
Bisa05g0813 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 289 361 IPR000504 GO:0003723
Bisa05g0813 420 FunFam Polyadenylate-binding protein RBP47B 93 173 - -
Bisa05g0813 420 SUPERFAMILY RNA-binding domain, RBD 171 280 IPR035979 GO:0003676
Bisa05g0813 420 Gene3D - 174 279 IPR012677 -
Bisa05g0813 420 Gene3D - 93 173 IPR012677 -
Bisa05g0813 420 Gene3D - 280 391 IPR012677 -
Bisa05g0813 420 SUPERFAMILY RNA-binding domain, RBD 62 177 IPR035979 GO:0003676
Bisa05g0813 420 MobiDBLite consensus disorder prediction 269 283 - -
Bisa05g0813 420 SMART rrm1_1 188 262 IPR000504 GO:0003723
Bisa05g0813 420 SMART rrm1_1 95 170 IPR000504 GO:0003723
Bisa05g0813 420 SMART rrm1_1 290 357 IPR000504 GO:0003723
Bisa05g0813 420 SUPERFAMILY RNA-binding domain, RBD 283 389 IPR035979 GO:0003676
Bisa05g0813 420 FunFam Polyadenylate-binding protein RBP47C isoform A 186 262 - -
Bisa05g0813 420 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 83 365 - -
Bisa05g0813 420 MobiDBLite consensus disorder prediction 1 33 - -
Bisa05g0813 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 291 352 IPR000504 GO:0003723
Bisa05g0813 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 96 164 IPR000504 GO:0003723
Bisa05g0813 420 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 189 258 IPR000504 GO:0003723
Bisa05g0813 420 FunFam Polyadenylate-binding protein RBP47 274 391 - -
Bisa05g0813 420 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 94 174 IPR000504 GO:0003723
Bisa05g0813 420 MobiDBLite consensus disorder prediction 1 23 - -
Bisa05g0813 420 CDD RRM3_NGR1_NAM8_like 288 359 - -
Bisa05g0813 420 CDD RRM2_SECp43_like 186 265 - -
Bisa05g0813 420 CDD RRM1_SECp43_like 95 175 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0813 Bisa-ChrBisa05 13545732 13548756 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0813 64 369 Eukaryotic Initiation Factors Gene Family AT4G34110 27.445 3.34e-29 118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g0813 05 13545732 13548756 Bisa09g1898 09 29763342 29767980 CCT
Bisa05g0813 05 13545732 13548756 Bisa05g0813 05 13545732 13548756 ECH