LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa05g0804	ATGCCTCTCTCTCGTGAATCATCCTCTCCTCGACCATCGACATATTCCTCTATTTCTCCTTCTGCCGTCAAACACACTGGCGCTGATGCCAATGTCAGTGCCGGTAATTACCTTAACGGCAGGGGGCAGTCATTTCTCCAGCGCCCCCGCCTTACTCGACAGAGGAAGCTTCGCTATCTCAGCGACTATGAAGTTGGCTTCCACGTTAGTGACGATTCATCGCTATCGGCTTCGCCTCAGGCCTCTCTCAATTCTCACTCACCGGGGGGTTCCGAACACCGGTCCACATCTGCTGTGCCACAACCTCTGCCGCTTCCCGAATCACCGTTGACTCGCCGGCCGGAGTCAACCGGTCCCAATGCCGGACACGTCCAGCTCGGATCTCCTTCCGTAGAACAATCGAGCTTGGCTTTTGGGAGGAAGACAATGAAGCACGATGCGATCACACATATAAAGTGTCCAGGCAATTTGGGTAGATTTTCTGGTGATCCCATCAGTGAAAATGCAAATTATAATTTGAGATTAAATATCCCTACTGCAGGTTTCTTGAGAGGGCATATTTCATGTAAAAATCCTAGAGCTGTCTCTCAGGATACTGAAGCTGAAAGCAGTTATAACTCAAGGTGGCAAGTTGTTGCCAAGAGTGCCCCAACAAGTGCTCTTTGCAGTCCTGTTACCAGTCCACGTAGATCAAGCAATGTAGATTTCTCTGATTCTTCGATCAGCATTCCTCAAGAATTTCATGACAACTTTTTTGGTCATTCTTTGAAAGTGTCACCAGCCTTGTCTGTTCACGGTCCAGACCATTCTTCTCTCTATAGCCCAGAGAACCATAATCCTCACCTCAATCCTAAAATTCAAGATGGACCTCAGCACCATAAATTTTTTGGTGGGGTGAGCCCAGAAAATAACCACATTGATGGACATCCATTGCCTCTTCCTCCTGGAGCTTCACCAGTAGCAACGTCTGTGCAGCATCAATCAAGTGCCTTGCATCACTCTACTGAAAATCCACCTTCAATGAAAGGTCAATGGCAGAAAGGAAAACTTATTGGACGTGGTACATTTGGAAGTGTTTATCATGCAACCAACCTAGAGACTGGAGCTTCATGTGCAATGAAGGTGGTGGATCTCATTCCTGATGATCCTAAATCTGTCGATTCTATAAAGCAACTACAGCAGGAAATCAAAATTCTTCGTCAACTACACCATCCGAATATTGTGCAGTATTATGGCAGTGAAATAGTTGATGATCGCTTGTACATATATATGGAGTATGTTCATCCTGGATCAGTTGATAAATTTGTGCGTGCAAATAATACAGCAATCACAGAATCTGTAGTTCGCAATTTTACACGGCATATTCTTTCAGGGTTGGTGTACTTGCATAGTACCAAAACTATCCACAGGGACATCAAAGGTGCAAACTTACTTGTTAATGCATCAGGCATTGTCAAGCTTGCTGATTTTGGGATGGCAAAAATTCTAACAGGGAAATCTTATGAACTTTCTTTGAAGGGCAGTCCGTACTGGATGGCTCCAGAGGTCATGAAGGCTGCCATTAAGAAAGATGACAATCCTGACCTTGCCTTTGCTATTGATATCTGGAGCCTGGGTTGCACTATCATTGAAATGTTGACCGGAAAACCTCCCTGGAGTGAGTTTGAAGGGCCTCAGGCCATGTTCAAGGTACTCCACAATTCGCCACCTATACCAGAAACATTATCTTCAGCTGGAAGGGATTTCCTTCAGAAATGTTTTGAAAGGGACCCTGCAAATCGACCATCAGCAGCAAGGCTTCTGGAGCACGCCTTTGTACAAAATTTGCATGATCAGGATAGTCTAGTTTGCCCCAAATTGTATCTTGGAGGAGACCCTGAAGATAAGTCACGTAGTCCCAGAAACCCTGCTAATCGTAACCGTGAAATAATTCTACCCTCCATGGGGACACGGATCATCAACGGAATTCAGAAATTAATTGGTGATTCTTCTAAACAATATAATGCTGAGGGTTCTAATTGTATTACATCTCATCACTCTCCTTGCTCTCTGCCAGAAGTTAACATTCATCAGTCTACCTTGAATCCTACTGCTACCCTTAGTTACATTTCTACTTCAAAGTCCAGCAAAATACCCCTCGCTGTTATGAGATTCATTACGAACATTTGA	2169	0.4463	MPLSRESSSPRPSTYSSISPSAVKHTGADANVSAGNYLNGRGQSFLQRPRLTRQRKLRYLSDYEVGFHVSDDSSLSASPQASLNSHSPGGSEHRSTSAVPQPLPLPESPLTRRPESTGPNAGHVQLGSPSVEQSSLAFGRKTMKHDAITHIKCPGNLGRFSGDPISENANYNLRLNIPTAGFLRGHISCKNPRAVSQDTEAESSYNSRWQVVAKSAPTSALCSPVTSPRRSSNVDFSDSSISIPQEFHDNFFGHSLKVSPALSVHGPDHSSLYSPENHNPHLNPKIQDGPQHHKFFGGVSPENNHIDGHPLPLPPGASPVATSVQHQSSALHHSTENPPSMKGQWQKGKLIGRGTFGSVYHATNLETGASCAMKVVDLIPDDPKSVDSIKQLQQEIKILRQLHHPNIVQYYGSEIVDDRLYIYMEYVHPGSVDKFVRANNTAITESVVRNFTRHILSGLVYLHSTKTIHRDIKGANLLVNASGIVKLADFGMAKILTGKSYELSLKGSPYWMAPEVMKAAIKKDDNPDLAFAIDIWSLGCTIIEMLTGKPPWSEFEGPQAMFKVLHNSPPIPETLSSAGRDFLQKCFERDPANRPSAARLLEHAFVQNLHDQDSLVCPKLYLGGDPEDKSRSPRNPANRNREIILPSMGTRIINGIQKLIGDSSKQYNAEGSNCITSHHSPCSLPEVNIHQSTLNPTATLSYISTSKSSKIPLAVMRFITNI	722

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa05g0804	722	ProSitePatterns	Protein kinases ATP-binding region signature.	351	374	IPR017441	GO:0005524
	Bisa05g0804	722	SMART	serkin_6	345	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa05g0804	722	Gene3D	Transferase(Phosphotransferase) domain 1	342	628	-	-
	Bisa05g0804	722	ProSiteProfiles	Protein kinase domain profile.	345	606	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa05g0804	722	MobiDBLite	consensus disorder prediction	71	98	-	-
	Bisa05g0804	722	MobiDBLite	consensus disorder prediction	267	344	-	-
	Bisa05g0804	722	Pfam	Protein kinase domain	346	605	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Bisa05g0804	722	FunFam	Mitogen-activated protein kinase kinase kinase 5	342	642	-	-
	Bisa05g0804	722	MobiDBLite	consensus disorder prediction	121	135	-	-
	Bisa05g0804	722	MobiDBLite	consensus disorder prediction	1	44	-	-
	Bisa05g0804	722	SUPERFAMILY	Protein kinase-like (PK-like)	328	618	IPR011009	-
	Bisa05g0804	722	PANTHER	MAP KINASE KINASE KINASE SSK2-RELATED-RELATED	75	619	-	-
	Bisa05g0804	722	MobiDBLite	consensus disorder prediction	320	342	-	-
	Bisa05g0804	722	MobiDBLite	consensus disorder prediction	71	135	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa05g0804	Bisa-ChrBisa05	13437536	13443070	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa05g0804	46	608	MAP Kinase Kinase Kinase	AT5G66850	44.811	1.77e-148	447

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Bisa05g0804		Pkinase	2.3e-67	CL0016