Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0794 ATGGTGAACAGAGCAGTCGGTGAAGCGATGGAGGCAAACAGGCGAGCCTGTGATGGGGATGGAGGCCGTAAGGAATTAACTTCTGAAGCTTTGGAGGCGCTTCGCTTCTCTGTCATCGTTTACTTTCAGTTGAAATGGGAGAATCATGCCATAACTGTAGACCTTGGGCGGAGGATATTTACTGGAACCATTTCCAGTTCGTCCATTTTGCCCAGCTTCTTCCTAGGGGTTTTGATCAACAGCTTTCATGCTAATAAGAGAAACAGAGATAACTATATGGAAGAAGTCAATATCCCTTCTAATTTTGGTGTTGAATGTGCTTCACCTGAGAAACCTGAACATGATGACAGTTTCAGAGTGCCAGCAGCTGCCCGTTCTAAAACTAGTGGTAAAAAGAATTGCAATGCTGGTTTGGAATTTGTCTCCCCTGTCTCAGCAGTGCCAGTAGTTGTAAGGGGTGTCCAAAGTAAGCAGAAACGAAGACCCAAACGATCAAATGCAGCCAAAGCCTCAAATGCATATGGGACAGTAGTTAACTGGATTACTGATGCCGAACCTTTATCTGCGTCTGCGGGCAGAAATAAGACGAATGAAACATTATATATTTCAAACAGAAGGCCTGTCACTGAAGATGAGAAAACTAAAGCCCTCCAGTTGGCTCAAGCACCTTGTACATATTTTATGCAACACTTACATTTCACTGTGCTAGTATTTGATCCAAGAGCGTGTGAGAAAGAAGCAGCATTTAATTCTGAATGCAGTCAAAATTCTTACGACCTTAATCATATTAAAGCACAGAAAAGAGACAGGGAGGAAAATTCTTCTTTAGGTGTTGTTGCCGAAGGTTTGCTGAAGAAAATGAGAGGGAGCACCTTCGAGAACCAGGAACTGAAGATGAGTATAGTTGGTAAAGAATTATCCTTGCTTGAAAGGGTAAAACCAATTAGCATGTTCAGAGAAACAGGAGAATCCTCCAAAGAAAACAAACAACTTGGATGCCCAGCTAGTGATGTTGCCGCGCCTTCTCCAATGGAATGTAGCAATGAAGATGAAGAGACTGCCATGCAGATTGGAAGTGGGAAGGAAGATGATCAATATATGCATGGTAGTGTTTGTTCGTCAAAGTCATCAACACAAGATGAGAAAAGAAATATCCCTTATCAATTTTCAATGGCGCATCTTCCAAACTGTAAGATAAAGGTCATCCTTCATAATATAAAAGGAGAATGTTGGACGGTTAATTCTGTGCCAACAACAAGAGTACATACGAGTCACACTCTCTGTGGTGGATGGATGGCTTTTGTTCGTGGCAATAACATTAAAGTTGGAGATATCTGCATTTTTGAACTTGTGCATGAGTTTGAACTACGTGTCCGCATCGTTGGTGGCGGAAAAGATGGGATAGACTGCCAGGTTGGGAAACTAGCTTTTAGTAAGCCTCTTGAAGGACAGTCCATTAATTCCCGTAGAACTTCTCTATATATGCTGAACAAGCCCAAAGTCAATTCAAAATGCATAGGAAAAGTCGATCTATCTGATAAAAAATGGTCAAAGATGGGTCAAGATGCTATTTTGTCTGCTGATAGAAAGAAACCTGGTAGACCGTCTAAGACTTCTATGAAGATGGTGATTTGCCCTCAATCGAAAGCTGTCAATAACAAGTCAGCGGTTCAGAGGAGACATCGTACTGAGGATGAACTAAGCTCACAGGCTAAAGCAGGTTTGAGAATGCTGTTTGCACTTGATGAACAAAAAGTGGCTCAGGCTTTCACTTCCTCATTTCCTAGTTTTGTGAAAATCATGAAAAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATACCAGTTCTCTGCAGCACATCTCCCATCCTACAAAACAGAAGTTGTGCTTCGTAATTTAAGAGGTGAATGTTGGGTTGTGAACTCTGTTCCAGACACAAAAGGCAGAGCAGTGCACACCTTTTGCGGCGGATGGATGGCCTTTGTTCGTGATAATGACATCAATTTTGGAGACACGTGCATCTTCGAACTTGTTTCTAAGTTTGAAATGCAGGTTTATATATCTGGGGTTGGAAAGGAGGGGCTTGATCACAGATTATTAGGAAGCCAAAAGTAG 2121 0.4187 MVNRAVGEAMEANRRACDGDGGRKELTSEALEALRFSVIVYFQLKWENHAITVDLGRRIFTGTISSSSILPSFFLGVLINSFHANKRNRDNYMEEVNIPSNFGVECASPEKPEHDDSFRVPAAARSKTSGKKNCNAGLEFVSPVSAVPVVVRGVQSKQKRRPKRSNAAKASNAYGTVVNWITDAEPLSASAGRNKTNETLYISNRRPVTEDEKTKALQLAQAPCTYFMQHLHFTVLVFDPRACEKEAAFNSECSQNSYDLNHIKAQKRDREENSSLGVVAEGLLKKMRGSTFENQELKMSIVGKELSLLERVKPISMFRETGESSKENKQLGCPASDVAAPSPMECSNEDEETAMQIGSGKEDDQYMHGSVCSSKSSTQDEKRNIPYQFSMAHLPNCKIKVILHNIKGECWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELVHEFELRVRIVGGGKDGIDCQVGKLAFSKPLEGQSINSRRTSLYMLNKPKVNSKCIGKVDLSDKKWSKMGQDAILSADRKKPGRPSKTSMKMVICPQSKAVNNKSAVQRRHRTEDELSSQAKAGLRMLFALDEQKVAQAFTSSFPSFVKIMKKFNVSGSYTLKIPYQFSAAHLPSYKTEVVLRNLRGECWVVNSVPDTKGRAVHTFCGGWMAFVRDNDINFGDTCIFELVSKFEMQVYISGVGKEGLDHRLLGSQK 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0794 706 CDD B3_DNA 595 688 IPR003340 GO:0003677
Bisa05g0794 706 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 224 465 IPR044837 -
Bisa05g0794 706 CDD B3_DNA 374 460 IPR003340 GO:0003677
Bisa05g0794 706 SMART B3_2 367 464 IPR003340 GO:0003677
Bisa05g0794 706 SMART B3_2 597 693 IPR003340 GO:0003677
Bisa05g0794 706 Pfam B3 DNA binding domain 597 689 IPR003340 GO:0003677
Bisa05g0794 706 Pfam B3 DNA binding domain 376 460 IPR003340 GO:0003677
Bisa05g0794 706 SUPERFAMILY DNA-binding pseudobarrel domain 590 691 IPR015300 -
Bisa05g0794 706 ProSiteProfiles B3 DNA-binding domain profile. 368 464 IPR003340 GO:0003677
Bisa05g0794 706 MobiDBLite consensus disorder prediction 320 346 - -
Bisa05g0794 706 Gene3D - 582 692 IPR015300 -
Bisa05g0794 706 Gene3D - 362 463 IPR015300 -
Bisa05g0794 706 ProSiteProfiles B3 DNA-binding domain profile. 597 693 IPR003340 GO:0003677
Bisa05g0794 706 SUPERFAMILY DNA-binding pseudobarrel domain 375 462 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0794 Bisa-ChrBisa05 13306288 13314660 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0794 547 696 B3 DNA Binding Superfamily AT5G42700 30.000 8.70e-15 71.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bisa05g0794 B3 9.9e-13 CL0405