Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0793 ATGAGACGAGTGAAATACATATTCCCGGGCTCACCTCGCGAAGAATTGATGATGCCGTTGCAGTTGGGACTAAAACGATGTCGTTTGTTTACAATTAAAAGTACGACCACCCAGCCTCGCATCACCCCAACGATGGACACCAGCAAGATTTGCCGAAACCATTTCCACGGCGGGGTTTTGCAAATTCTTTCTCCAAAGAAAATTCCTGCACGATTCATTAATTGCATGGAAGGCAGGACATCTGGATCAGTCTCATTGACAGGTCCGAGCGGAAATACTTGGCATGTTCAATTGCTTCAGCAGGATGAAGATCTATTCCTCCATCATGGATGGCCAACATTTTTGGAAGATCATAATATAGAAACTGGTGACCTTTTGGTTTTCAGATATGAGGGTCACTTACATTTCACTGTGCTAGTATTTGATCCAAGAGCGTGCGAGAAAGAAGCAGCGTTTAATTCTGAATGCAGTCAAAATTCTTACAACCTTAATCATATTAAAGCACAGAAAAGAGACAGGGAGGAAAGTTCTTCTTTAGGTGTTGTTGCCGAAGGTTTGCTGAAGAAAATGAGAGGGAGCACCTTCGAGAACCAGGAACTAAAGATGAGTATAGTTGGTAAAGAATTATCCTTCCTTGAAAGGGTAAAACCAATTAGCATGTTCAGAGAAACAGGAGAATCCTCCAAAGAAAACAAACAACTTAGATGCCCAGCTAGTGATGTTGCTGTGCCTTCTCAAATGGAATATAGCAATGAAGATGAAGAGACTGCCATGCAGATTGGAAGTGGGAAGGAAGATGATCAATATATGCATGGTAGTGTTTGTTTGTCAAAGTCATCAACACAAGATGAGAAAAGAGTGGCTCAATTGTTTACTTCCTATTTCCCATATTTTGTGAGAATCATGAAAAGCTTCAACATCAGTGGTTCCTATACTCTGAATATCCCTTATCAATTTTCAATGGCGCATCTTCCAAATTGTAAGATAAAGGTCATCCTTCATAATATAAAAGGAGAACGTTGGACGGTTAATTCTGTGCCAACAACAAGAGTACATACGAGTCACACTCTCTGTGGTGGATGGATGGCTTTTGTTCGTGGCAATAACATTAAAATTGGAGATATCTGCATTTTTGAACTTGTGCATGAGTGTGAATTACGTGTCTGCATCGTTGGTGTTGGAAAAGATGGGATAGACTGCCAGGTTGGGAAACTAGCTTTTAGTAGGCCTCTTGAAGGACATTCCAGTAATTCCCATAGAACTTCTCGATATATGCTGAACAAGCCCAAAGTCAATTCAAAATGCATAGGAAAAGTCGATCTATCTGAAAAAAAATGGTCAAAGATGGGTCAAGATGCTGTTTTGTCTGCTGATAGAAAGAAACCTGGTAGACCGTCTAAGACTTCTATGAAGATGGTGATTTGCCCTCAATCGAAAGCTGTCAATAATAAGTCAGCAGTTCAGAGGAGACATCGTACTGAGGATGAACTAAGCTCACAGGCTAAAGCAGGTTTGAGAATGCTATTTGCACTTGATGAACAAAAAGTGGCTCAGGCTTTCACTTCCTCATTTCCTAGTTTTGTAAAAATCATGAAAAAGTTCAATGTCAGTGGATCATACACTTTGAAAATCCCATTCCAGTTCTCTGCAGCACATCTCCCATCCTACAAAATAGAAGTTGTGCTTCGTAATTTAAGAGGTGAATGTTGGGTTGTGAACTCTGTTCCAGACACAAAAGGCAGAGCAGTGCACACCTTTTGCGGCGGATGGATGGCCTTTGTTCGTGATAATGACATCAATTTTGGAGACACGTGCATCTTCGAACTTGTTTCTAAGTTTGAGATGCAAGTTTATATATCTGGGGTTGGAAAGGAGGGGCTTGATCACAAATTATTAGGAAGCCAAAAGTAG 1911 0.4071 MRRVKYIFPGSPREELMMPLQLGLKRCRLFTIKSTTTQPRITPTMDTSKICRNHFHGGVLQILSPKKIPARFINCMEGRTSGSVSLTGPSGNTWHVQLLQQDEDLFLHHGWPTFLEDHNIETGDLLVFRYEGHLHFTVLVFDPRACEKEAAFNSECSQNSYNLNHIKAQKRDREESSSLGVVAEGLLKKMRGSTFENQELKMSIVGKELSFLERVKPISMFRETGESSKENKQLRCPASDVAVPSQMEYSNEDEETAMQIGSGKEDDQYMHGSVCLSKSSTQDEKRVAQLFTSYFPYFVRIMKSFNISGSYTLNIPYQFSMAHLPNCKIKVILHNIKGERWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKIGDICIFELVHECELRVCIVGVGKDGIDCQVGKLAFSRPLEGHSSNSHRTSRYMLNKPKVNSKCIGKVDLSEKKWSKMGQDAVLSADRKKPGRPSKTSMKMVICPQSKAVNNKSAVQRRHRTEDELSSQAKAGLRMLFALDEQKVAQAFTSSFPSFVKIMKKFNVSGSYTLKIPFQFSAAHLPSYKIEVVLRNLRGECWVVNSVPDTKGRAVHTFCGGWMAFVRDNDINFGDTCIFELVSKFEMQVYISGVGKEGLDHKLLGSQK 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0793 636 CDD B3_DNA 68 142 IPR003340 GO:0003677
Bisa05g0793 636 CDD B3_DNA 525 618 IPR003340 GO:0003677
Bisa05g0793 636 ProSiteProfiles B3 DNA-binding domain profile. 527 623 IPR003340 GO:0003677
Bisa05g0793 636 SUPERFAMILY DNA-binding pseudobarrel domain 67 149 IPR015300 -
Bisa05g0793 636 CDD B3_DNA 296 390 IPR003340 GO:0003677
Bisa05g0793 636 Gene3D - 276 393 IPR015300 -
Bisa05g0793 636 Gene3D - 512 622 IPR015300 -
Bisa05g0793 636 Gene3D - 48 146 IPR015300 -
Bisa05g0793 636 Pfam B3 DNA binding domain 302 390 IPR003340 GO:0003677
Bisa05g0793 636 Pfam B3 DNA binding domain 527 619 IPR003340 GO:0003677
Bisa05g0793 636 Pfam B3 DNA binding domain 68 142 IPR003340 GO:0003677
Bisa05g0793 636 ProSiteProfiles B3 DNA-binding domain profile. 298 394 IPR003340 GO:0003677
Bisa05g0793 636 SUPERFAMILY DNA-binding pseudobarrel domain 292 392 IPR015300 -
Bisa05g0793 636 ProSiteProfiles B3 DNA-binding domain profile. 68 144 IPR003340 GO:0003677
Bisa05g0793 636 SUPERFAMILY DNA-binding pseudobarrel domain 520 621 IPR015300 -
Bisa05g0793 636 SMART B3_2 59 144 IPR003340 GO:0003677
Bisa05g0793 636 SMART B3_2 527 623 IPR003340 GO:0003677
Bisa05g0793 636 SMART B3_2 298 394 IPR003340 GO:0003677
Bisa05g0793 636 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 67 395 IPR044837 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0793 Bisa-ChrBisa05 13295777 13300111 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0793 67 381 B3 DNA Binding Superfamily AT3G18990 22.941 2.67e-15 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Bisa05g0793 B3 8.1e-12 CL0405