Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0754 ATGGCCAGTGGGTTTGGGGAATCAACAAGCAGGACACCCCCAAGCCCCTCCTGCTCCAGCAACAATAACAACAGCGATGCAGGCAATTTTGAATGCAACATTTGCTTTGAATTAGCACAAGACCCTATCATTACTTTATGTGGTCATCTTTTCTGTTGGCCTTGTCTTTACAAATGGCTTCACTTTCACTCCCAGTCACGAGAATGCCCTGTCTGCAAGGCCCTCATTGAGGAGGAGAAACTGGTTCCCTTATATGGGAGAGGGAAGACATCAAGTGACCCAAGGTCGAGGTCTATTCCTGGCTTGAATATACCACATCGTCCAGCTGGTCAGAGGCCCGAAACTGCTCCACCACCTGAAGCAAATCATTTTCCTCAACATGGATTTGGATTTATGGGTGGTTTGGGAGGGTTTGCTCCAATGGCAACAGCAAGATTTGGGAATTTTACATTGTCCACAGCATTTGGTGGTTTCATTCCATCGTTATTCAACTTTCAAATGCACGGGCTTCATGATGGAGCCATGTATGGTAATCATCCAGGTTTTCATTATGGATTTTCTAATCCATATCATGGTGGGCACTTTCATGGTTATTATCCTCAGCACACAGGTCACGGGCAACAAGATTATTATCTGAAGAGGCTACTTATGCTTGTTATCTTTTGTGTTCTTCTTGCTTTTATTTGGCAATAG 693 0.4444 MASGFGESTSRTPPSPSCSSNNNNSDAGNFECNICFELAQDPIITLCGHLFCWPCLYKWLHFHSQSRECPVCKALIEEEKLVPLYGRGKTSSDPRSRSIPGLNIPHRPAGQRPETAPPPEANHFPQHGFGFMGGLGGFAPMATARFGNFTLSTAFGGFIPSLFNFQMHGLHDGAMYGNHPGFHYGFSNPYHGGHFHGYYPQHTGHGQQDYYLKRLLMLVIFCVLLAFIWQ 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0754 230 ProSiteProfiles Zinc finger RING-type profile. 32 73 IPR001841 -
Bisa05g0754 230 MobiDBLite consensus disorder prediction 1 20 - -
Bisa05g0754 230 SMART ring_2 32 72 IPR001841 -
Bisa05g0754 230 SUPERFAMILY RING/U-box 29 85 - -
Bisa05g0754 230 ProSitePatterns Zinc finger RING-type signature. 47 56 IPR017907 -
Bisa05g0754 230 Pfam Zinc finger, C3HC4 type (RING finger) 32 72 IPR018957 GO:0046872
Bisa05g0754 230 CDD RING-HC_AtRMA-like 30 74 - -
Bisa05g0754 230 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF5-RELATED 18 225 IPR045103 GO:0005783|GO:0006511|GO:0061630
Bisa05g0754 230 FunFam E3 ubiquitin-protein ligase RNF185 isoform X2 16 86 - -
Bisa05g0754 230 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 15 86 IPR013083 -
Bisa05g0754 230 MobiDBLite consensus disorder prediction 86 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0754 Bisa-ChrBisa05 12485300 12485992 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0754 16 213 C3H Transcription Factor Family AT1G19310 65.366 1.89e-87 256