Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0703 ATGCCATTGAGAGATATTGTTCGTGAGCTCAGGGAAATTCGAGATGGCAAGGGTAACATAAATAGAAGAGTGGTAGAGGCCAAGCGGATGCATTGCCGTGGAAAATCTCATATTGCACCTGAATTGTCCTCACCATCATCATCATCAGCGACTTCGTTGGTGACTCAGCAAAGCTGCTGGGCTAACTTACCACCTGAGTTGCTATTAGATATAATTCAAAGGGTGGAAGCGAGTGAAATTTCCTGGCCTGCTCGGAGAGTGGTTGTAGCATGTGCCTCAGTCTGTAGGTCATGGAGGAAGATAACGGAGGAGGTGGTCAAGACACCGGAGCAGTGTGGGTGGCTTACCTTTCCTATATCACTGAAGCAGCCTGGTCCAAGAGAGACTCCAATACAGTGTTTTATTAAGAGAGAAAGGGTGACTTCAACATATCATTTATATCTTGGTCTCAGCCCGGCTCTCTCTGGGGATATGAGTAAACTGCTACTGGCAGCAAAGAAGATTAGAAGGGCAACATGTACAGAATTTTTAATATCCTTGGTCGCAGATGATTTCTCCAAAGTAAACAATACTTACGTTGGAAAGTTAAGGTCTAATTTCCTGGGCACTAAGTTCATGATCTTGGATGGTCAGCCCCCGGCCGATTCTTCTCTTCCATTGAATAGCAAATTGCAGCAAAGAATCCATTCAAAGCAGGTTCTTCCAAGGGTTGGTGCTGCCAACTATAATGTGGCCACCATATCTTATGAGCTCAATGTTCTCCGCACGAGAGGTCCAAGGAGAATGCAGTGTACCATGCATTCAATTCCCTTATCTGCCATCGAAGAAGGGGGCACTGCTCCTACTCCTTTGAAGTTTACAAATTGCCTTGACGAGCGTCTATCCACCGCATCCATATCGAAAGGAAGAAAGCCAGGAGTTGAGCATGGCTCGAATAGCATTGACAATCCCCCAGAATCGAACCAAAGTGCAAGGGAACCACTGATTTTGAAAAATAAAGCTCCTAGATGGCATGAACAACTGCAATGTTGGTGCTTGAATTTTAAGGGACGTGTTACAGTGGCCTCAGTGAAGAACTTCCAGCTTGTAGCAGCTGCAGAGCCTCACCAGAATGTTTCAGTGGCCGAACAAGACAGAGTGATACTACAATTTGGGAAGATTGGAAAGGACATATTCACCATGGATTACCGTTACCCCCTCTCTGCGTTTCAAGCCTTCGCAATCTGCTTGAGCAGTTTTGACACTAAACCAGCTTGCGAATGA 1263 0.4568 MPLRDIVRELREIRDGKGNINRRVVEAKRMHCRGKSHIAPELSSPSSSSATSLVTQQSCWANLPPELLLDIIQRVEASEISWPARRVVVACASVCRSWRKITEEVVKTPEQCGWLTFPISLKQPGPRETPIQCFIKRERVTSTYHLYLGLSPALSGDMSKLLLAAKKIRRATCTEFLISLVADDFSKVNNTYVGKLRSNFLGTKFMILDGQPPADSSLPLNSKLQQRIHSKQVLPRVGAANYNVATISYELNVLRTRGPRRMQCTMHSIPLSAIEEGGTAPTPLKFTNCLDERLSTASISKGRKPGVEHGSNSIDNPPESNQSAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPHQNVSVAEQDRVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0703 420 PRINTS Tubby superfamily signature 241 268 IPR000007 -
Bisa05g0703 420 PRINTS Tubby superfamily signature 192 216 IPR000007 -
Bisa05g0703 420 PRINTS Tubby superfamily signature 377 396 IPR000007 -
Bisa05g0703 420 PRINTS Tubby superfamily signature 176 192 IPR000007 -
Bisa05g0703 420 PRINTS Tubby superfamily signature 330 347 IPR000007 -
Bisa05g0703 420 PRINTS Tubby superfamily signature 348 364 IPR000007 -
Bisa05g0703 420 PRINTS Tubby superfamily signature 398 420 IPR000007 -
Bisa05g0703 420 ProSitePatterns Tub family signature 2. 405 420 IPR018066 -
Bisa05g0703 420 MobiDBLite consensus disorder prediction 300 324 - -
Bisa05g0703 420 ProSitePatterns Tub family signature 1. 348 361 IPR018066 -
Bisa05g0703 420 Gene3D - 60 105 - -
Bisa05g0703 420 Gene3D Tubby Protein; Chain A 118 420 IPR025659 -
Bisa05g0703 420 SUPERFAMILY F-box domain 56 123 IPR036047 GO:0005515
Bisa05g0703 420 PANTHER TUBBY-RELATED 45 418 - -
Bisa05g0703 420 CDD F-box_AtTLP-like 60 104 - -
Bisa05g0703 420 SUPERFAMILY Tubby C-terminal domain-like 109 420 IPR025659 -
Bisa05g0703 420 Pfam Tub family 121 415 IPR000007 -
Bisa05g0703 420 FunFam Tubby-like F-box protein 117 420 - -
Bisa05g0703 420 Pfam F-box domain 60 105 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0703 Bisa-ChrBisa05 11594466 11596504 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0703 33 420 TUB Transcription Factor Family AT1G47270 64.885 5.01e-174 490
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Bisa05g0703 Tub 4.8e-106 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g0703 05 11594466 11596504 Bisa05g0703 05 11594466 11596504 ECH