Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0576 ATGCTTGATTCCGTTCTTCTGGCGCTTTCCCTCCCCTGCCTCGGCATGGTGGCTCTTTTCGTGGTCTACATCTGCCTTCTTTGGTACGCCACCACTCACCAGCCCGATATCAGCCTGCCGGAGAAGTCCGTCTCCGACAAGGGCCTCTCGCTTTCGGAGCTCGAGAAGTTGCCGAAAATCACCGGAAAAGAACTGGTCATTGGGACCGAATGCGCCGTCTGCCTCGACGAGATCGAGAGCGAGCAACCGGCTCGACTAATTCCGAGTTGCAATCACGGATTTCATTTGGAATGCGCCGATACTTGGCTTTCCAAGCATCCTCTCTGTCCGGTTTGTAGAGCCAAACTTGATCCTCAATTTTTCAGTTCTTCAGAAAATCCATGTTGA 387 0.5271 MLDSVLLALSLPCLGMVALFVVYICLLWYATTHQPDISLPEKSVSDKGLSLSELEKLPKITGKELVIGTECAVCLDEIESEQPARLIPSCNHGFHLECADTWLSKHPLCPVCRAKLDPQFFSSSENPC 128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0576 128 ProSiteProfiles Zinc finger RING-type profile. 71 113 IPR001841 -
Bisa05g0576 128 Pfam Ring finger domain 70 113 IPR001841 -
Bisa05g0576 128 SUPERFAMILY RING/U-box 70 119 - -
Bisa05g0576 128 SMART ring_2 71 112 IPR001841 -
Bisa05g0576 128 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 37 119 IPR013083 -
Bisa05g0576 128 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 17 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0576 Bisa-ChrBisa05 9450159 9450545 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0576 1 128 C3H Transcription Factor Family AT5G42200 52.941 3.60e-45 142
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g0576 05 9450159 9450545 Bisa09g2090 09 33494541 33494927 CCT
Bisa05g0576 05 9450159 9450545 Bisa05g0576 05 9450159 9450545 ECH