Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0560 ATGTCGCCGGTGGACTCAAAGACGGCGTGCGCTGCGGGGGAGGGGAAGCATTACCCTCCCCCACTCGCCTCTCACGACGACGTCGTCAAGGACCCTACCCTCTTCTGGGACACGATCAGGCGCTTTCACTTCGTTATGGGTACCAAGTTCATGATTCCTGTGATTGGAGGGAAAGAACTGGATTTGCACGTTCTTTACGTGGAAGTTACAAGGAGGAGTGGTTATGAGAAGGTGGTGGCAGAGAAGAAATGGAGGGAAGTGGGGAATGTTTTCAGGTTCTCTCCTACCACAACAAGTGCCTCTTTTGTACTGAGGAAACACTATTTCAGTCTTCTTTACCATTACGAACAAGTTCACTTCTTTAAGGTTCGGGGTCCTCTGTACACTCCATCTGCAGCTGCATTTTCTGTCAGCAGCAACCAGTCATGGAAACCTGAATTAGCTATTGTGGAATATTCACCCAAGCGGATAAACCAGTGTCCCGATTCACATAATGAAGATGCTTCGTGTTTTGAAGTAAACGGGACGATCGAAGGGAAATTCGATTGTGGGTATTTGGTGTCTGTGAAAGTCGGTTCGGAGATTCTCAGAGGCGTGCTTTATCATCCACAGCAATCGGATGCTTCTGCACCAGTATCCAAATGCGAGATTAGTGGGAATGCGATTGTGCCATACAGCGGAATTGGAAAAACCCGGCGTTTGGGAAGGAGAAGGCGAAGCAGAAGGAGGTGGGACCCAAACTATCCAAAGCCAAACAGGAGTGGCTATAACTTCTTTTTTGCCGAGAAGCATTACAAGCTCAAAGCCCTTTATCCAAACAGAGAAAGAGAGTTCACCAAGATGATTGGTGAGTCATGGAGTAGTCTCAGCCCGGAAGAGAGGATGGTTTACCAGAACATTGGTTTGAGAGACAAGGAAAGGTACAAGAGAGAATTGAGGGAGTACAAAGAGAAAATGAAGCTGACTCAGACTGTGCCACTTGGAAGTTCTTTGTCCTTGTTGGCAAGACCAGCCAAAGAATGA 1023 0.4761 MSPVDSKTACAAGEGKHYPPPLASHDDVVKDPTLFWDTIRRFHFVMGTKFMIPVIGGKELDLHVLYVEVTRRSGYEKVVAEKKWREVGNVFRFSPTTTSASFVLRKHYFSLLYHYEQVHFFKVRGPLYTPSAAAFSVSSNQSWKPELAIVEYSPKRINQCPDSHNEDASCFEVNGTIEGKFDCGYLVSVKVGSEILRGVLYHPQQSDASAPVSKCEISGNAIVPYSGIGKTRRLGRRRRSRRRWDPNYPKPNRSGYNFFFAEKHYKLKALYPNREREFTKMIGESWSSLSPEERMVYQNIGLRDKERYKRELREYKEKMKLTQTVPLGSSLSLLARPAKE 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0560 340 CDD HMG-box_AtHMGB9-like 249 315 - -
Bisa05g0560 340 Gene3D High mobility group box domain 234 325 IPR036910 -
Bisa05g0560 340 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677
Bisa05g0560 340 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677
Bisa05g0560 340 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 249 316 IPR009071 -
Bisa05g0560 340 SMART ARID_2 26 116 - -
Bisa05g0560 340 Pfam HMG (high mobility group) box 249 316 IPR009071 -
Bisa05g0560 340 Pfam ARID/BRIGHT DNA binding domain 34 116 IPR001606 GO:0003677
Bisa05g0560 340 SUPERFAMILY HMG-box 246 319 IPR036910 -
Bisa05g0560 340 Gene3D - 23 124 IPR036431 GO:0003677
Bisa05g0560 340 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 10 324 - -
Bisa05g0560 340 SUPERFAMILY ARID-like 25 124 IPR036431 GO:0003677
Bisa05g0560 340 Coils Coil 305 325 - -
Bisa05g0560 340 SMART hmgende2 248 317 IPR009071 -
Bisa05g0560 340 SMART bright_3 30 121 IPR001606 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0560 Bisa-ChrBisa05 9245827 9247739 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0560 9 321 ARID Transcription Factor Family AT1G76110 66.246 4.29e-140 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Bisa05g0560 ARID 7.9e-17 CL0123