Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa05g0556 ATGGCTTACCTAAGTAACGAATTTGATCAAAATAATCAACAAAATGATCTTGGTGCAATTTTACGAAATGGAAAGGAAATCCTTTTTCAGGCATTCAACTGGGAGTCTCACAAGCATGATTGGTGGAGAAATTTAGAAAGAAAAGTATCTGACATAGCAAAAGCTGGATTTACTTCAGCATGGTTGCCACCAGCAACACATTCCTTCTCATCTGAAGGTTACACTCCACAGAACCTGTACTCTCTTAATAGCTCATATGGTTCTGAGCATCAGCTAAAAGCTTTGCTTCAAAAGATGAAGCAGTACAAGGTCAGAGCAATGGCTGACATAGTAATCAATCATCGTTGTGGCACAACCCGAGGAAATGGAGGGATGTATAATCGTTATGATGGAATTCCTTTATCATGGGATGAACGTGCTGTGACATCATGTACTGGTGGTTTGGGAAATCGAAGCACAGGGGCCATTTTCCATGGGTTTCCAAATATTGATCATACCCAAGATTTTGTGAGAAAAGACATCATTGGATGGCTCCGGTGGCTGCGCAATAATGTAGGATTCCAGGATTTTCGTTTTGATTTTGCAAGAGGTTATTCACCAAAATTTGTGAGAGAATATATTGAAGGAGCAAAGCCAGCATTCTCTGTTGGAGAGTACTGGGATTCTTGCAACTATAATGGTTGTGTTCTGGACTATAACCAAGATAGCCATAGGCAGCGGATAATCAATTGGATTGATGGCACAGGTCAGCTTTCAACCGCATTTGACTTCACAACAAAAGGAATTCTCCAGGAAGCTGTCAAGGGAGATTTTTGGCGATTACGCGATCCTCAAGGAAAGCCACCGGGTGTGATGGGATGGTGGCCTTCGAGGGCAGTGACATTTCTAGATAACCATGATACAGGCTCAACACAGGCTCATTGGCCCTTTCCCTCAAATTATATCATGGAGGGGTATGCTTACATCCTGACTCATCCGGGAATCCCAACAGTTTTCTATGATCACTTTTACGAGGGTAACTCCCTTCATGATCAGATTGTGAAGCTGATTGATATCCGCAAGCGTAAAGGTATACACAGTCGATCACCTATCAGGATTCTAGATGCCAAACAAAATCTTTACTCTGCAATGATAGGGGATAAAGTGTGCATGAAGATTGGAGATGCCTCATGGTGCCCTTCTGGCAGGGAATGGACACTCGCAACTTCTGGCCACAGATATGCAGTATGGCAGAAATAG 1239 0.4278 MAYLSNEFDQNNQQNDLGAILRNGKEILFQAFNWESHKHDWWRNLERKVSDIAKAGFTSAWLPPATHSFSSEGYTPQNLYSLNSSYGSEHQLKALLQKMKQYKVRAMADIVINHRCGTTRGNGGMYNRYDGIPLSWDERAVTSCTGGLGNRSTGAIFHGFPNIDHTQDFVRKDIIGWLRWLRNNVGFQDFRFDFARGYSPKFVREYIEGAKPAFSVGEYWDSCNYNGCVLDYNQDSHRQRIINWIDGTGQLSTAFDFTTKGILQEAVKGDFWRLRDPQGKPPGVMGWWPSRAVTFLDNHDTGSTQAHWPFPSNYIMEGYAYILTHPGIPTVFYDHFYEGNSLHDQIVKLIDIRKRKGIHSRSPIRILDAKQNLYSAMIGDKVCMKIGDASWCPSGREWTLATSGHRYAVWQK 412
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa05g0556 412 Gene3D Glycosidases 26 357 - -
Bisa05g0556 412 Pfam Alpha amylase, catalytic domain 50 115 IPR006047 GO:0005975
Bisa05g0556 412 PIRSF Alpha-amylase_plant 2 412 IPR013775 GO:0004556|GO:0005509|GO:0005975
Bisa05g0556 412 Gene3D - 358 412 IPR013780 -
Bisa05g0556 412 SUPERFAMILY (Trans)glycosidases 33 337 IPR017853 -
Bisa05g0556 412 CDD AmyAc_arch_bac_plant_AmyA 27 364 - -
Bisa05g0556 412 PRINTS Alpha-amylase signature 103 114 IPR006046 GO:0004556|GO:0005975|GO:0043169
Bisa05g0556 412 PRINTS Alpha-amylase signature 290 302 IPR006046 GO:0004556|GO:0005975|GO:0043169
Bisa05g0556 412 PRINTS Alpha-amylase signature 187 198 IPR006046 GO:0004556|GO:0005975|GO:0043169
Bisa05g0556 412 Pfam Alpha-amylase C-terminal beta-sheet domain 355 411 IPR012850 GO:0004556|GO:0005509|GO:0005975
Bisa05g0556 412 SUPERFAMILY Glycosyl hydrolase domain 358 412 - -
Bisa05g0556 412 SMART alpha-amyl_c2 354 412 IPR012850 GO:0004556|GO:0005509|GO:0005975
Bisa05g0556 412 PANTHER ALPHA-AMYLASE 28 411 - -
Bisa05g0556 412 SMART aamy 26 365 IPR006047 GO:0005975
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa05g0556 Bisa-ChrBisa05 9211110 9214666 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa05g0556 1 412 Glycoside Hydrolase AT1G76130 77.966 0.0 695
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa05g0556 05 9211110 9214666 Bisa05g0556 05 9211110 9214666 ECH